View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0622_low_32 (Length: 529)
Name: NF0622_low_32
Description: NF0622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0622_low_32 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 149; Significance: 2e-78; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 21 - 181
Target Start/End: Original strand, 16470358 - 16470518
Alignment:
| Q |
21 |
acatcatcaaccttaaaagagaaaatgataggaagagatagatggagataaatgatgcattaaagaatatgacgtgtctaaataccattgttgtaaatct |
120 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
16470358 |
acatcttcaaccttaaaagagaaaatgataggaagagatagatggagataaatgatgtattaaagaatatgatgtgtctaaataccattgttgtaaatct |
16470457 |
T |
|
| Q |
121 |
taattaatgataaaaagaagaaaacaaattggaaatagaagacagatccccgagtagtttg |
181 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16470458 |
taattaatgataaaaagaagaaaacaaattggaaatagaagacagatccccgagtagtttg |
16470518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 253 - 358
Target Start/End: Original strand, 16470590 - 16470695
Alignment:
| Q |
253 |
aaattgcattaagagaagatggatctggcatgatattcagagtatatatctctactacaccataaaatgcatcaagaaatacaaaagaatataaaacatc |
352 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
16470590 |
aaattgcattaagagaagatgggtctggcatgatattcagagtatatatctctactacaccataaaatgcatcaagaaatacaaaaaaacataaaacatc |
16470689 |
T |
|
| Q |
353 |
atagat |
358 |
Q |
| |
|
|||||| |
|
|
| T |
16470690 |
atagat |
16470695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2030 times since January 2019
Visitors: 3811