View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0622_low_35 (Length: 522)

Name: NF0622_low_35
Description: NF0622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0622_low_35
NF0622_low_35
[»] chr8 (11 HSPs)
chr8 (1-278)||(34702821-34703097)
chr8 (112-196)||(5423183-5423267)
chr8 (225-264)||(4480422-4480461)
chr8 (228-269)||(7042873-7042914)
chr8 (226-263)||(29638418-29638455)
chr8 (225-254)||(40077712-40077741)
chr8 (229-269)||(139142-139182)
chr8 (229-265)||(3384656-3384692)
chr8 (225-264)||(8418257-8418297)
chr8 (159-215)||(15559130-15559186)
chr8 (228-264)||(37459460-37459496)
[»] chr5 (4 HSPs)
chr5 (112-196)||(43573010-43573094)
chr5 (225-264)||(11099430-11099469)
chr5 (232-266)||(7613830-7613864)
chr5 (228-264)||(4576363-4576399)
[»] chr2 (8 HSPs)
chr2 (225-264)||(9724994-9725033)
chr2 (131-192)||(12524316-12524377)
chr2 (225-265)||(32556286-32556326)
chr2 (225-263)||(9472538-9472576)
chr2 (225-263)||(18460604-18460642)
chr2 (225-265)||(883104-883144)
chr2 (233-265)||(16864885-16864917)
chr2 (120-212)||(41436091-41436183)
[»] chr1 (6 HSPs)
chr1 (225-263)||(27209921-27209959)
chr1 (120-196)||(27831858-27831934)
chr1 (225-263)||(36326159-36326197)
chr1 (229-265)||(28908209-28908245)
chr1 (225-265)||(34332226-34332266)
chr1 (225-265)||(45049105-45049145)
[»] chr7 (5 HSPs)
chr7 (225-264)||(1643270-1643309)
chr7 (225-263)||(2849371-2849409)
chr7 (229-269)||(26296151-26296191)
chr7 (229-265)||(27234622-27234658)
chr7 (229-269)||(37490565-37490605)
[»] chr3 (6 HSPs)
chr3 (225-264)||(32172787-32172826)
chr3 (174-215)||(29526055-29526096)
chr3 (229-269)||(11251074-11251114)
chr3 (225-265)||(39851764-39851804)
chr3 (225-257)||(48409702-48409734)
chr3 (229-265)||(48744380-48744416)
[»] chr4 (2 HSPs)
chr4 (227-257)||(34790910-34790940)
chr4 (232-264)||(45290159-45290191)
[»] scaffold0034 (1 HSPs)
scaffold0034 (229-265)||(98945-98981)


Alignment Details
Target: chr8 (Bit Score: 173; Significance: 9e-93; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 173; E-Value: 9e-93
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 34702821 - 34703097
Alignment:
Q  1 acttgtgtccttatggcacaagttaacaacacccaataaaataaatattgtttcaaaataatttacccatttcaggttccaagacaatattaatgannnn 100  Q
    ||||||||||||| | ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |        
T  34702821 acttgtgtccttaggacacaaattaacaacacccaataaaa-aaatattgtttcaaaataatttacccatttcacgttccaagacaatattaattatttt 34702919  T
Q  101 nnn-ctcattatactataactaatacaaatttcatcattctcaatgcaatatcttcctgtttgcatttgtgatcatagtgaatacaccaatacttgataa 199  Q
        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  34702920 ttttctcattatactataactaatacaaatttcatcattctcaatgcaatatcttcctgtttgcatttgtgatcatagtgaatacaccaatacttgat-a 34703018  T
Q  200 aaacatttaaaatcatannnnnnngctctttcatttatacacttttcttaatatgtgttaaatgaataaacaacttaca 278  Q
    |||||||||||| ||||       ||||||||| ||||| |||||||||||||| |||||||||||||||| |||||||    
T  34703019 aaacatttaaaaccatatttttttgctctttcacttatatacttttcttaatatatgttaaatgaataaacgacttaca 34703097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 112 - 196
Target Start/End: Complemental strand, 5423267 - 5423183
Alignment:
Q  112 actataactaatacaaatttcatcattctcaatgcaatatcttcctgtttgcatttgtgatcatagtgaatacaccaatacttga 196  Q
    ||||||| |||||| | ||| |||||||||||| |||||||||||  |||| |||| |||| || || ||||||||||| |||||    
T  5423267 actataattaatactacttttatcattctcaattcaatatcttccactttgtatttatgataatggtaaatacaccaatgcttga 5423183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 264
Target Start/End: Complemental strand, 4480461 - 4480422
Alignment:
Q  225 ctctttcatttatacacttttcttaatatgtgttaaatga 264  Q
    |||||||||||||||| |||||||||||| ||||||||||    
T  4480461 ctctttcatttatacatttttcttaatatatgttaaatga 4480422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 269
Target Start/End: Original strand, 7042873 - 7042914
Alignment:
Q  228 tttcatttatacacttttcttaatatgtgttaaatgaataaa 269  Q
    ||||||||||||| ||||||| |||||||| |||||||||||    
T  7042873 tttcatttatacatttttcttgatatgtgtgaaatgaataaa 7042914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 263
Target Start/End: Original strand, 29638418 - 29638455
Alignment:
Q  226 tctttcatttatacacttttcttaatatgtgttaaatg 263  Q
    |||||||||||||||||||||||||| ||||| |||||    
T  29638418 tctttcatttatacacttttcttaatctgtgtgaaatg 29638455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 254
Target Start/End: Complemental strand, 40077741 - 40077712
Alignment:
Q  225 ctctttcatttatacacttttcttaatatg 254  Q
    ||||||||||||||||||||||||||||||    
T  40077741 ctctttcatttatacacttttcttaatatg 40077712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 229 - 269
Target Start/End: Original strand, 139142 - 139182
Alignment:
Q  229 ttcatttatacacttttcttaatatgtgttaaatgaataaa 269  Q
    |||||||||||| |||||||||||||||| |||||| ||||    
T  139142 ttcatttatacatttttcttaatatgtgtgaaatgagtaaa 139182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 229 - 265
Target Start/End: Original strand, 3384656 - 3384692
Alignment:
Q  229 ttcatttatacacttttcttaatatgtgttaaatgaa 265  Q
    |||||||||||| |||||||||||||||| |||||||    
T  3384656 ttcatttatacatttttcttaatatgtgtaaaatgaa 3384692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 225 - 264
Target Start/End: Complemental strand, 8418297 - 8418257
Alignment:
Q  225 ctctttcatttatacactttt-cttaatatgtgttaaatga 264  Q
    ||||||||||||| ||||||| |||||||||||||||||||    
T  8418297 ctctttcatttatgcactttttcttaatatgtgttaaatga 8418257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 159 - 215
Target Start/End: Complemental strand, 15559186 - 15559130
Alignment:
Q  159 tttgcatttgtgatcatagtgaatacaccaatacttgataaaaacatttaaaatcat 215  Q
    ||||||||| |||| || || ||||||||||||||||| || |||| ||||||||||    
T  15559186 tttgcatttatgataatggtaaatacaccaatacttgacaagaacacttaaaatcat 15559130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 228 - 264
Target Start/End: Original strand, 37459460 - 37459496
Alignment:
Q  228 tttcatttatacacttttcttaatatgtgttaaatga 264  Q
    ||||||||||||||||||||||||| |||| ||||||    
T  37459460 tttcatttatacacttttcttaataagtgtgaaatga 37459496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 112 - 196
Target Start/End: Original strand, 43573010 - 43573094
Alignment:
Q  112 actataactaatacaaatttcatcattctcaatgcaatatcttcctgtttgcatttgtgatcatagtgaatacaccaatacttga 196  Q
    ||||||| |||||| |||||||||| || |||| |||||||| ||  ||||||||| ||||||| |||||| |||||||||||||    
T  43573010 actataattaatactaatttcatcactcccaattcaatatctcccactttgcatttatgatcatggtgaatgcaccaatacttga 43573094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 264
Target Start/End: Complemental strand, 11099469 - 11099430
Alignment:
Q  225 ctctttcatttatacacttttcttaatatgtgttaaatga 264  Q
    |||||||||||||||| |||||||||||||||| ||||||    
T  11099469 ctctttcatttatacatttttcttaatatgtgtgaaatga 11099430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 232 - 266
Target Start/End: Original strand, 7613830 - 7613864
Alignment:
Q  232 atttatacacttttcttaatatgtgttaaatgaat 266  Q
    ||||||||| |||||||||||||||||||||||||    
T  7613830 atttatacatttttcttaatatgtgttaaatgaat 7613864  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 228 - 264
Target Start/End: Complemental strand, 4576399 - 4576363
Alignment:
Q  228 tttcatttatacacttttcttaatatgtgttaaatga 264  Q
    ||||||||||||| |||||||||||||||| ||||||    
T  4576399 tttcatttatacatttttcttaatatgtgtgaaatga 4576363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 225 - 264
Target Start/End: Original strand, 9724994 - 9725033
Alignment:
Q  225 ctctttcatttatacacttttcttaatatgtgttaaatga 264  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  9724994 ctctttcatttatacacttttcttaatatgtgtgaaatga 9725033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 131 - 192
Target Start/End: Original strand, 12524316 - 12524377
Alignment:
Q  131 tcatcattctcaatgcaatatcttcctgtttgcatttgtgatcatagtgaatacaccaatac 192  Q
    ||||||||| |||| |||||||||||  ||||||||| |||||||||| ||| |||||||||    
T  12524316 tcatcattcccaattcaatatcttccactttgcatttatgatcatagtaaatgcaccaatac 12524377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 225 - 265
Target Start/End: Original strand, 32556286 - 32556326
Alignment:
Q  225 ctctttcatttatacacttttcttaatatgtgttaaatgaa 265  Q
    |||||||| |||||||||||||||||||||||| |||||||    
T  32556286 ctctttcacttatacacttttcttaatatgtgtgaaatgaa 32556326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 225 - 263
Target Start/End: Original strand, 9472538 - 9472576
Alignment:
Q  225 ctctttcatttatacacttttcttaatatgtgttaaatg 263  Q
    |||||||||||||||| |||||||||||||||| |||||    
T  9472538 ctctttcatttatacatttttcttaatatgtgtgaaatg 9472576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 225 - 263
Target Start/End: Original strand, 18460604 - 18460642
Alignment:
Q  225 ctctttcatttatacacttttcttaatatgtgttaaatg 263  Q
    ||||||||||||||||||||||||||| ||||| |||||    
T  18460604 ctctttcatttatacacttttcttaatctgtgtgaaatg 18460642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 225 - 265
Target Start/End: Complemental strand, 883144 - 883104
Alignment:
Q  225 ctctttcatttatacacttttcttaatatgtgttaaatgaa 265  Q
    |||||||| ||||||||||||||||| |||||| |||||||    
T  883144 ctctttcacttatacacttttcttaaaatgtgtgaaatgaa 883104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 233 - 265
Target Start/End: Complemental strand, 16864917 - 16864885
Alignment:
Q  233 tttatacacttttcttaatatgtgttaaatgaa 265  Q
    |||||||| ||||||||||||||||||||||||    
T  16864917 tttatacatttttcttaatatgtgttaaatgaa 16864885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 120 - 212
Target Start/End: Original strand, 41436091 - 41436183
Alignment:
Q  120 taatacaaatttcatcattctcaatgcaatatcttcctgtttgcatttgtgatcatagtgaatacaccaatacttgataaaaacatttaaaat 212  Q
    |||||| | |||||||||||||||| |||||| ||||  ||||||||| ||||  |   ||||||| |||||||| | ||||||| |||||||    
T  41436091 taatactactttcatcattctcaattcaatatattccactttgcatttatgatagtgaagaatacatcaatacttaacaaaaacacttaaaat 41436183  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 225 - 263
Target Start/End: Complemental strand, 27209959 - 27209921
Alignment:
Q  225 ctctttcatttatacacttttcttaatatgtgttaaatg 263  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  27209959 ctctttcatttatacacttttcttaatatgtgtaaaatg 27209921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 120 - 196
Target Start/End: Original strand, 27831858 - 27831934
Alignment:
Q  120 taatacaaatttcatcattctcaatgcaatatcttcctgtttgcatttgtgatcatagtgaatacaccaatacttga 196  Q
    |||||| | |||||||| || |||| |||||||||||  ||||||||| |||| || |||||| |||||||||||||    
T  27831858 taatactactttcatcactcccaattcaatatcttccactttgcatttatgataatggtgaatgcaccaatacttga 27831934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 225 - 263
Target Start/End: Complemental strand, 36326197 - 36326159
Alignment:
Q  225 ctctttcatttatacacttttcttaatatgtgttaaatg 263  Q
    ||||||||||||||||||||||||||| ||||| |||||    
T  36326197 ctctttcatttatacacttttcttaatctgtgtgaaatg 36326159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 229 - 265
Target Start/End: Original strand, 28908209 - 28908245
Alignment:
Q  229 ttcatttatacacttttcttaatatgtgttaaatgaa 265  Q
    |||||||||||| |||||||||||||||| |||||||    
T  28908209 ttcatttatacatttttcttaatatgtgtgaaatgaa 28908245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 225 - 265
Target Start/End: Original strand, 34332226 - 34332266
Alignment:
Q  225 ctctttcatttatacacttttcttaatatgtgttaaatgaa 265  Q
    |||||||| ||||||| |||||||||||||||| |||||||    
T  34332226 ctctttcacttatacatttttcttaatatgtgtgaaatgaa 34332266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 225 - 265
Target Start/End: Original strand, 45049105 - 45049145
Alignment:
Q  225 ctctttcatttatacacttttcttaatatgtgttaaatgaa 265  Q
    ||||||| ||||||||||||||||||| ||||| |||||||    
T  45049105 ctctttcctttatacacttttcttaatttgtgtgaaatgaa 45049145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 264
Target Start/End: Complemental strand, 1643309 - 1643270
Alignment:
Q  225 ctctttcatttatacacttttcttaatatgtgttaaatga 264  Q
    |||||||||||||||| |||||||||||||||| ||||||    
T  1643309 ctctttcatttatacatttttcttaatatgtgtgaaatga 1643270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 225 - 263
Target Start/End: Original strand, 2849371 - 2849409
Alignment:
Q  225 ctctttcatttatacacttttcttaatatgtgttaaatg 263  Q
    |||||||||||||||| |||||||||||||||| |||||    
T  2849371 ctctttcatttatacatttttcttaatatgtgtgaaatg 2849409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 229 - 269
Target Start/End: Complemental strand, 26296191 - 26296151
Alignment:
Q  229 ttcatttatacacttttcttaatatgtgttaaatgaataaa 269  Q
    |||||||||||| |||||||||||||||| |||||| ||||    
T  26296191 ttcatttatacatttttcttaatatgtgtcaaatgagtaaa 26296151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 229 - 265
Target Start/End: Original strand, 27234622 - 27234658
Alignment:
Q  229 ttcatttatacacttttcttaatatgtgttaaatgaa 265  Q
    |||||||||||| |||||||||||||||| |||||||    
T  27234622 ttcatttatacatttttcttaatatgtgtgaaatgaa 27234658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 229 - 269
Target Start/End: Complemental strand, 37490605 - 37490565
Alignment:
Q  229 ttcatttatacacttttcttaatatgtgttaaatgaataaa 269  Q
    |||||||||||| ||||||||| |||||| |||||||||||    
T  37490605 ttcatttatacatttttcttaacatgtgtgaaatgaataaa 37490565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 264
Target Start/End: Complemental strand, 32172826 - 32172787
Alignment:
Q  225 ctctttcatttatacacttttcttaatatgtgttaaatga 264  Q
    ||||||||||||| ||||||||||||||||||| ||||||    
T  32172826 ctctttcatttattcacttttcttaatatgtgtgaaatga 32172787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 215
Target Start/End: Original strand, 29526055 - 29526096
Alignment:
Q  174 atagtgaatacaccaatacttgataaaaacatttaaaatcat 215  Q
    |||||||||  ||||||||||||||| |||||||||||||||    
T  29526055 atagtgaatcgaccaatacttgataagaacatttaaaatcat 29526096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 229 - 269
Target Start/End: Complemental strand, 11251114 - 11251074
Alignment:
Q  229 ttcatttatacacttttcttaatatgtgttaaatgaataaa 269  Q
    |||||||||||| |||||||||||| ||| |||||||||||    
T  11251114 ttcatttatacatttttcttaatatatgtgaaatgaataaa 11251074  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 225 - 265
Target Start/End: Complemental strand, 39851804 - 39851764
Alignment:
Q  225 ctctttcatttatacacttttcttaatatgtgttaaatgaa 265  Q
    |||||||||||||||| ||| |||||||||||| |||||||    
T  39851804 ctctttcatttatacattttgcttaatatgtgtgaaatgaa 39851764  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 225 - 257
Target Start/End: Original strand, 48409702 - 48409734
Alignment:
Q  225 ctctttcatttatacacttttcttaatatgtgt 257  Q
    |||||||||||||||| ||||||||||||||||    
T  48409702 ctctttcatttatacatttttcttaatatgtgt 48409734  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 229 - 265
Target Start/End: Original strand, 48744380 - 48744416
Alignment:
Q  229 ttcatttatacacttttcttaatatgtgttaaatgaa 265  Q
    |||||||||||||||||||||||| |||| |||||||    
T  48744380 ttcatttatacacttttcttaatacgtgtgaaatgaa 48744416  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 227 - 257
Target Start/End: Complemental strand, 34790940 - 34790910
Alignment:
Q  227 ctttcatttatacacttttcttaatatgtgt 257  Q
    |||||||||||||||||||||||||||||||    
T  34790940 ctttcatttatacacttttcttaatatgtgt 34790910  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 232 - 264
Target Start/End: Original strand, 45290159 - 45290191
Alignment:
Q  232 atttatacacttttcttaatatgtgttaaatga 264  Q
    ||||||||| |||||||||||||||||||||||    
T  45290159 atttatacatttttcttaatatgtgttaaatga 45290191  T

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Target: scaffold0034 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 229 - 265
Target Start/End: Original strand, 98945 - 98981
Alignment:
Q  229 ttcatttatacacttttcttaatatgtgttaaatgaa 265  Q
    |||||||||||| |||||||||||||||| |||||||    
T  98945 ttcatttatacatttttcttaatatgtgtgaaatgaa 98981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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