View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0622_low_38 (Length: 502)

Name: NF0622_low_38
Description: NF0622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0622_low_38
NF0622_low_38
[»] chr5 (18 HSPs)
chr5 (61-451)||(3724787-3725152)
chr5 (381-451)||(39008025-39008094)
chr5 (380-451)||(6610729-6610800)
chr5 (381-451)||(5357960-5358030)
chr5 (381-453)||(22583012-22583085)
chr5 (381-451)||(4044619-4044690)
chr5 (381-451)||(35646232-35646303)
chr5 (384-451)||(41686634-41686701)
chr5 (381-451)||(8369840-8369910)
chr5 (92-137)||(3723349-3723394)
chr5 (381-451)||(35334669-35334741)
chr5 (381-451)||(11099620-11099691)
chr5 (381-451)||(33012249-33012319)
chr5 (381-451)||(42575781-42575851)
chr5 (381-442)||(4475140-4475201)
chr5 (384-449)||(7276282-7276346)
chr5 (381-451)||(25814255-25814329)
chr5 (384-451)||(15814560-15814628)
[»] chr7 (14 HSPs)
chr7 (381-451)||(2846818-2846888)
chr7 (377-451)||(30462907-30462981)
chr7 (381-451)||(18234800-18234871)
chr7 (380-451)||(33774183-33774254)
chr7 (381-451)||(26938581-26938651)
chr7 (381-451)||(7426021-7426089)
chr7 (381-451)||(33584457-33584528)
chr7 (381-443)||(29257442-29257504)
chr7 (381-451)||(48981274-48981344)
chr7 (381-451)||(31581585-31581661)
chr7 (381-453)||(12308275-12308346)
chr7 (380-449)||(2842192-2842259)
chr7 (381-422)||(37496568-37496609)
chr7 (395-451)||(44604619-44604675)
[»] chr4 (16 HSPs)
chr4 (382-451)||(42024343-42024412)
chr4 (388-451)||(33047400-33047463)
chr4 (381-451)||(39976533-39976603)
chr4 (381-451)||(48740416-48740485)
chr4 (381-451)||(49812125-49812194)
chr4 (380-449)||(42185940-42186009)
chr4 (381-451)||(25390611-25390686)
chr4 (381-443)||(41710294-41710356)
chr4 (381-451)||(43420920-43420990)
chr4 (381-451)||(1825390-1825462)
chr4 (384-451)||(42544108-42544174)
chr4 (381-451)||(283619-283689)
chr4 (381-451)||(39258419-39258488)
chr4 (381-422)||(20964465-20964506)
chr4 (390-451)||(34020939-34021000)
chr4 (380-424)||(47386655-47386699)
[»] chr8 (15 HSPs)
chr8 (380-451)||(38252580-38252651)
chr8 (381-443)||(2119611-2119673)
chr8 (381-451)||(44790565-44790634)
chr8 (381-448)||(34132976-34133043)
chr8 (381-451)||(5391943-5392013)
chr8 (381-451)||(32967419-32967489)
chr8 (381-451)||(138929-138998)
chr8 (419-449)||(5962618-5962648)
chr8 (381-451)||(21587171-21587241)
chr8 (381-451)||(28802662-28802732)
chr8 (381-451)||(31410750-31410820)
chr8 (385-451)||(34287221-34287287)
chr8 (380-417)||(10729096-10729133)
chr8 (381-422)||(14689855-14689896)
chr8 (381-422)||(29451243-29451284)
[»] chr3 (13 HSPs)
chr3 (380-451)||(21585552-21585623)
chr3 (381-451)||(26134845-26134915)
chr3 (381-451)||(38600947-38601017)
chr3 (381-451)||(1334917-1334987)
chr3 (381-453)||(39365157-39365229)
chr3 (381-451)||(32023243-32023312)
chr3 (381-451)||(36097798-36097868)
chr3 (380-424)||(43640740-43640784)
chr3 (381-451)||(33994553-33994622)
chr3 (381-435)||(39329908-39329962)
chr3 (387-449)||(48744126-48744188)
chr3 (380-449)||(54458454-54458521)
chr3 (384-416)||(54845706-54845738)
[»] chr2 (19 HSPs)
chr2 (381-451)||(28572106-28572176)
chr2 (381-451)||(33751356-33751426)
chr2 (381-457)||(10394380-10394457)
chr2 (381-449)||(40964948-40965016)
chr2 (381-451)||(3100294-3100365)
chr2 (380-451)||(7213369-7213440)
chr2 (382-451)||(10818517-10818585)
chr2 (381-449)||(564992-565060)
chr2 (384-451)||(24451680-24451748)
chr2 (381-436)||(30757724-30757779)
chr2 (381-451)||(3123539-3123608)
chr2 (384-442)||(12872898-12872956)
chr2 (381-451)||(18181356-18181426)
chr2 (385-451)||(28301337-28301403)
chr2 (378-451)||(37248026-37248100)
chr2 (381-451)||(44534629-44534698)
chr2 (381-422)||(20696952-20696993)
chr2 (382-422)||(13221965-13222005)
chr2 (381-453)||(31348406-31348478)
[»] chr1 (16 HSPs)
chr1 (381-451)||(11426012-11426082)
chr1 (384-451)||(16039975-16040042)
chr1 (389-443)||(8773141-8773195)
chr1 (381-451)||(27698707-27698777)
chr1 (381-451)||(46495913-46495983)
chr1 (381-451)||(4466297-4466367)
chr1 (383-451)||(46536236-46536305)
chr1 (380-451)||(45889391-45889465)
chr1 (381-451)||(17724857-17724927)
chr1 (381-422)||(2886066-2886107)
chr1 (386-451)||(3555698-3555762)
chr1 (381-451)||(7787568-7787642)
chr1 (388-449)||(19533064-19533125)
chr1 (410-451)||(51749326-51749367)
chr1 (381-449)||(52432202-52432275)
chr1 (392-451)||(28839245-28839305)
[»] chr6 (5 HSPs)
chr6 (381-449)||(33109268-33109336)
chr6 (381-451)||(30064091-30064160)
chr6 (381-451)||(3604742-3604812)
chr6 (387-442)||(15081324-15081379)
chr6 (381-424)||(34915980-34916023)
[»] scaffold0034 (1 HSPs)
scaffold0034 (389-451)||(97962-98024)
[»] scaffold0001 (1 HSPs)
scaffold0001 (381-448)||(394672-394741)
[»] scaffold0045 (1 HSPs)
scaffold0045 (381-428)||(26218-26264)
[»] scaffold0028 (1 HSPs)
scaffold0028 (390-451)||(26513-26573)


Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-146; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 61 - 451
Target Start/End: Original strand, 3724787 - 3725152
Alignment:
Q  61 ctcctatttccgatactttcactcagaacagaaaattggagtttgatattatttcaggaacatcaatgtcgtgtttgaatgcgtatggtgcaagaacgta 160  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  3724787 ctcctatttccgatactttcactgagaacagaaaattggagtttgatattatttcaggaacatcaatgtcgtgtttgaatgcgtatggtgcaacaacgta 3724886  T
Q  161 cataaataatttcatcccacttggtccattgttgctatccgttcagctataatgggggtataatgacaacagataatagaaatgagtagtgccaggcctc 260  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  3724887 cataaataatttcatcccacttggtccattgttgctatccgttcagctataatgggggtataatgacaacagataatagaaatgagtagtgccacgcctc 3724986  T
Q  261 aaagatcctgtagaaatagaggtataaataaaagatcctttagcacacataaaagaaataaaagtataatcaaagatcctgtagaacatat--aagctaa 358  Q
    |||||||||||||||      ||||||||||||||                     |||| ||||||||||||||||| ||||||||||||  |||||||    
T  3724987 aaagatcctgtagaa------gtataaataaaaga---------------------aatagaagtataatcaaagatcatgtagaacatataaaagctaa 3725059  T
Q  359 catactcttttcactcgtatgctactccctccgtcccataataactgaattatttgcaataaaaaagtgtcctaaaataactgagtcatttca 451  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  3725060 catactcttttcactcgtatgatactccctccgtcccataataactgaatcatttgcaataaaaaagtgtcctaaaataactgagtcatttca 3725152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 381 - 451
Target Start/End: Original strand, 39008025 - 39008094
Alignment:
Q  381 tactccctccgtcccataataactgaattatttgcaataaaaaagtgtcctaaaataactgagtcatttca 451  Q
    |||||||||||||||| ||||||||| |||||||||| |||||| ||||||||||||||| ||||||||||    
T  39008025 tactccctccgtcccacaataactgagttatttgcaa-aaaaaaatgtcctaaaataactaagtcatttca 39008094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 380 - 451
Target Start/End: Original strand, 6610729 - 6610800
Alignment:
Q  380 ctactccctccgtcccataataactgaattatttgcaataaaaaagtgtcctaaaataactgagtcatttca 451  Q
    ||||||||||||||||||||||||||| | |||| ||| ||||||  |||| ||||||||||||||||||||    
T  6610729 ctactccctccgtcccataataactgagtcattttcaaaaaaaaaaagtcccaaaataactgagtcatttca 6610800  T

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Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 381 - 451
Target Start/End: Complemental strand, 5358030 - 5357960
Alignment:
Q  381 tactccctccgtcccataataactgaattatttgcaataaaaaagtgtcctaaaataactgagtcatttca 451  Q
    |||||| |||||||||||||||||||   ||||  ||||||||||||||| |||||||||| |||||||||    
T  5358030 tactccgtccgtcccataataactgagacatttttaataaaaaagtgtcccaaaataactgtgtcatttca 5357960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 381 - 453
Target Start/End: Complemental strand, 22583085 - 22583012
Alignment:
Q  381 tactccctccgtcccataataactgaattatttgcaataaaaaa-gtgtcctaaaataactgagtcatttcaat 453  Q
    |||||||||||||||| ||||||| | | |||||||| |||||| ||||||| |||||||||||| ||||||||    
T  22583085 tactccctccgtcccacaataactaagtcatttgcaaaaaaaaatgtgtccttaaataactgagttatttcaat 22583012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 381 - 451
Target Start/End: Complemental strand, 4044690 - 4044619
Alignment:
Q  381 tactccctccgtcccataataactgaattatttgcaata-aaaaagtgtcctaaaataactgagtcatttca 451  Q
    |||||||||||||||||||||||||| | |||||||| | ||||| ||||| ||||||| ||| ||||||||    
T  4044690 tactccctccgtcccataataactgagtcatttgcaaaataaaaaatgtcccaaaataattgaatcatttca 4044619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 381 - 451
Target Start/End: Complemental strand, 35646303 - 35646232
Alignment:
Q  381 tactccctccgtcccataataactgaattatttgc-aataaaaaagtgtcctaaaataactgagtcatttca 451  Q
    |||||||||| |||||||||||||||  ||||||| || |||||||||||  || |||||||||||||||||    
T  35646303 tactccctccatcccataataactgagctatttgcaaaaaaaaaagtgtctcaatataactgagtcatttca 35646232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 384 - 451
Target Start/End: Complemental strand, 41686701 - 41686634
Alignment:
Q  384 tccctccgtcccataataactgaattatttgcaataaaaaagtgtcctaaaataactgagtcatttca 451  Q
    ||||||| |||||||||||||||   ||||| || || ||||||||| ||||||||||||||||||||    
T  41686701 tccctccatcccataataactgagccatttgtaaaaataaagtgtcccaaaataactgagtcatttca 41686634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 381 - 451
Target Start/End: Complemental strand, 8369910 - 8369840
Alignment:
Q  381 tactccctccgtcccataataactgaattatttgcaataaaaaagtgtcctaaaataactgagtcatttca 451  Q
    |||||||||||||||| |||| ||||   ||||||||  ||||||||||| |||||||||||| |||||||    
T  8369910 tactccctccgtcccacaatagctgagccatttgcaaataaaaagtgtcccaaaataactgagccatttca 8369840  T

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Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 92 - 137
Target Start/End: Original strand, 3723349 - 3723394
Alignment:
Q  92 aaaattggagtttgatattatttcaggaacatcaatgtcgtgtttg 137  Q
    ||||||||||||| |||||||||||| |||||||||||| ||||||    
T  3723349 aaaattggagtttaatattatttcagaaacatcaatgtcatgtttg 3723394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 381 - 451
Target Start/End: Complemental strand, 35334741 - 35334669
Alignment:
Q  381 tactccctccgtcccataataactgaattatttgcaat--aaaaaagtgtcctaaaataactgagtcatttca 451  Q
    ||||| |||||||||||||||||||| | |||| ||||  |||||||||||| ||||||| |||| |||||||    
T  35334741 tactctctccgtcccataataactgagtcattttcaataaaaaaaagtgtcccaaaataagtgagccatttca 35334669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 451
Target Start/End: Complemental strand, 11099691 - 11099620
Alignment:
Q  381 tactccctccgtcccataataactgaattatttgcaataaaaaag-tgtcctaaaataactgagtcatttca 451  Q
    |||||||||||| | ||||||||||| | | |||||| ||||||  ||||| ||||||||||||||||||||    
T  11099691 tactccctccgttctataataactgagtcaattgcaaaaaaaaaaatgtcccaaaataactgagtcatttca 11099620  T

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Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 381 - 451
Target Start/End: Original strand, 33012249 - 33012319
Alignment:
Q  381 tactccctccgtcccataataactgaattatttgcaataaaaaagtgtcctaaaataactgagtcatttca 451  Q
    ||||| ||||||||||||||||| || | |||||||| || ||||| ||| |||||| ||||| |||||||    
T  33012249 tactcactccgtcccataataaccgagtcatttgcaaaaacaaagtatcccaaaatatctgagccatttca 33012319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 381 - 451
Target Start/End: Complemental strand, 42575851 - 42575781
Alignment:
Q  381 tactccctccgtcccataataactgaattatttgcaataaaaaagtgtcctaaaataactgagtcatttca 451  Q
    |||||||||||||||| |||||||||   ||||| || | |||||||||| |||||||| ||| |||||||    
T  42575851 tactccctccgtcccacaataactgagccatttgtaaaagaaaagtgtcccaaaataaccgagccatttca 42575781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 442
Target Start/End: Original strand, 4475140 - 4475201
Alignment:
Q  381 tactccctccgtcccataataactgaattatttgcaataaaaaagtgtcctaaaataactga 442  Q
    |||| ||||||||||| ||||||||| | |||||| |||||| | ||||| |||||||||||    
T  4475140 tactacctccgtcccaaaataactgagtcatttgctataaaatattgtcccaaaataactga 4475201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 449
Target Start/End: Original strand, 7276282 - 7276346
Alignment:
Q  384 tccctccgtcccataataactgaattatttgcaataaaaaagtgtcctaaaataactgagtcattt 449  Q
    ||||||||||||| |||||||||   |||||||| ||||||  |||||||||||||||||| ||||    
T  7276282 tccctccgtcccaaaataactgagccatttgcaa-aaaaaaaagtcctaaaataactgagttattt 7276346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 451
Target Start/End: Original strand, 25814255 - 25814329
Alignment:
Q  381 tactccctccgtcccataataactgaattatttgc----aataaaaaagtgtcctaaaataactgagtcatttca 451  Q
    |||||| |||||||||||||||||||   ||||||    || |||||||||| ||||||||||||| ||||||||    
T  25814255 tactccatccgtcccataataactgagacatttgcaaaaaaaaaaaaagtgttctaaaataactgaatcatttca 25814329  T

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Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 384 - 451
Target Start/End: Original strand, 15814560 - 15814628
Alignment:
Q  384 tccctccgtcccataataactgaattatttgca-ataaaaaagtgtcctaaaataactgagtcatttca 451  Q
    ||||| |||||||||||||||||  ||||||||   |||||| ||||  ||||||||||||||||||||    
T  15814560 tcccttcgtcccataataactgagctatttgcacccaaaaaaatgtctcaaaataactgagtcatttca 15814628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 5e-20; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 381 - 451
Target Start/End: Complemental strand, 2846888 - 2846818
Alignment:
Q  381 tactccctccgtcccataataactgaattatttgcaataaaaaagtgtcctaaaataactgagtcatttca 451  Q
    |||||||||||||||||||||||||| | |||| |||||||||||||||| ||||||| ||||||||||||    
T  2846888 tactccctccgtcccataataactgagtcattttcaataaaaaagtgtcccaaaataagtgagtcatttca 2846818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 377 - 451
Target Start/End: Original strand, 30462907 - 30462981
Alignment:
Q  377 atgctactccctccgtcccataataactgaattatttgcaataaaaaagtgtcctaaaataactgagtcatttca 451  Q
    |||||||||||||||||||||||||| ||| | |||||||| |||||| |||| |||||||| ||||||||||||    
T  30462907 atgctactccctccgtcccataataattgagtcatttgcaaaaaaaaaatgtcataaaataattgagtcatttca 30462981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 381 - 451
Target Start/End: Original strand, 18234800 - 18234871
Alignment:
Q  381 tactccctccgtcccataataactgaattatttgca-ataaaaaagtgtcctaaaataactgagtcatttca 451  Q
    |||||||||||||| ||||||||||||| ||||||| | |||||| |||| |||||||||||||||||||||    
T  18234800 tactccctccgtcctataataactgaatcatttgcacacaaaaaaatgtcataaaataactgagtcatttca 18234871  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 380 - 451
Target Start/End: Complemental strand, 33774254 - 33774183
Alignment:
Q  380 ctactccctccgtcccataataactgaattatttgcaataaaaaagtgtcctaaaataactgagtcatttca 451  Q
    |||||||||||||| || ||||||||| | |||| ||| |||||||||| | ||||||||||||||||||||    
T  33774254 ctactccctccgtctcacaataactgagtcatttacaaaaaaaaagtgttccaaaataactgagtcatttca 33774183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 381 - 451
Target Start/End: Complemental strand, 26938651 - 26938581
Alignment:
Q  381 tactccctccgtcccataataactgaattatttgcaataaaaaagtgtcctaaaataactgagtcatttca 451  Q
    |||||||||||||||| |||| |||| | ||||||||  ||||||||||| ||||||||| ||||||||||    
T  26938651 tactccctccgtcccacaatagctgagtcatttgcaaataaaaagtgtcccaaaataacttagtcatttca 26938581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 381 - 451
Target Start/End: Complemental strand, 7426089 - 7426021
Alignment:
Q  381 tactccctccgtcccataataactgaattatttgcaataaaaaagtgtcctaaaataactgagtcatttca 451  Q
    |||||||||||||||| |||||||||   ||||||||  ||||||||||| |||||||||||| |||||||    
T  7426089 tactccctccgtcccacaataactgagccatttgcaa--aaaaagtgtcccaaaataactgagccatttca 7426021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 381 - 451
Target Start/End: Original strand, 33584457 - 33584528
Alignment:
Q  381 tactccctccgtcccataataactgaattatttgcaat-aaaaaagtgtcctaaaataactgagtcatttca 451  Q
    ||||||||||||||||||||||||||   |||| |||| |||||||||||  |||||||||||| |||||||    
T  33584457 tactccctccgtcccataataactgaggcattttcaataaaaaaagtgtctcaaaataactgagccatttca 33584528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 381 - 443
Target Start/End: Original strand, 29257442 - 29257504
Alignment:
Q  381 tactccctccgtcccataataactgaattatttgcaataaaaaagtgtcctaaaataactgag 443  Q
    |||||| |||||| |||||||||||| | |||| |||||||||||||||| ||||||| ||||    
T  29257442 tactccatccgtctcataataactgagtcattttcaataaaaaagtgtcccaaaataagtgag 29257504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 381 - 451
Target Start/End: Original strand, 48981274 - 48981344
Alignment:
Q  381 tactccctccgtcccataataactgaattatttgcaataaaaaagtgtcctaaaataactgagtcatttca 451  Q
    ||||||||||||||||||||||  ||    ||||||| || ||||||||| ||||||||||||||||||||    
T  48981274 tactccctccgtcccataataatcgagccgtttgcaaaaataaagtgtcccaaaataactgagtcatttca 48981344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 381 - 451
Target Start/End: Complemental strand, 31581661 - 31581585
Alignment:
Q  381 tactccctccgtcccataataactgaattatttgcaataaaaaa------gtgtcctaaaataactgagtcatttca 451  Q
    ||||| |||||||||||||||||||| | |||||||| ||||||      || ||||||||||||||||||||||||    
T  31581661 tactctctccgtcccataataactgagtcatttgcaaaaaaaaaaaaaaagtatcctaaaataactgagtcatttca 31581585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 381 - 453
Target Start/End: Original strand, 12308275 - 12308346
Alignment:
Q  381 tactccctccgtcccataataactgaattatttgcaataaaaaagtgtcctaaaataactgagtcatttcaat 453  Q
    |||||||||||||||| |||||| || | ||||| || |||||| ||||  ||||||||||||||||||||||    
T  12308275 tactccctccgtcccacaataaccgagtcatttgaaaaaaaaaa-tgtctcaaaataactgagtcatttcaat 12308346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 380 - 449
Target Start/End: Complemental strand, 2842259 - 2842192
Alignment:
Q  380 ctactccctccgtcccataataactgaattatttgcaataaaaaagtgtcctaaaataactgagtcattt 449  Q
    |||||| ||||||| |||||||||||| | ||||| || | |||  ||||||||||||||||||||||||    
T  2842259 ctactctctccgtctcataataactgagtcatttgtaaaacaaa--tgtcctaaaataactgagtcattt 2842192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 422
Target Start/End: Complemental strand, 37496609 - 37496568
Alignment:
Q  381 tactccctccgtcccataataactgaattatttgcaataaaa 422  Q
    |||||||||||||||||||||||||| | |||||||| ||||    
T  37496609 tactccctccgtcccataataactgagtcatttgcaaaaaaa 37496568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 451
Target Start/End: Complemental strand, 44604675 - 44604619
Alignment:
Q  395 cataataactgaattatttgcaataaaaaagtgtcctaaaataactgagtcatttca 451  Q
    |||||||||||||  |||| ||||| |||||||||| ||||||| |||| |||||||    
T  44604675 cataataactgaaccattttcaatataaaagtgtcccaaaataagtgagccatttca 44604619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 382 - 451
Target Start/End: Complemental strand, 42024412 - 42024343
Alignment:
Q  382 actccctccgtcccataataactgaattatttgcaataaaaaagtgtcctaaaataactgagtcatttca 451  Q
    ||||||||||||||||||||||||| | |||| ||||||||||||||||||| |||| ||||||||||||    
T  42024412 actccctccgtcccataataactgagtcattttcaataaaaaagtgtcctaagataaatgagtcatttca 42024343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 388 - 451
Target Start/End: Original strand, 33047400 - 33047463
Alignment:
Q  388 tccgtcccataataactgaattatttgcaataaaaaagtgtcctaaaataactgagtcatttca 451  Q
    ||||||||||||||| |||   |||||||| |||||||||||| ||||||||||||||||||||    
T  33047400 tccgtcccataataattgagccatttgcaaaaaaaaagtgtcccaaaataactgagtcatttca 33047463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 381 - 451
Target Start/End: Complemental strand, 39976603 - 39976533
Alignment:
Q  381 tactccctccgtcccataataactgaattatttgcaataaaaaagtgtcctaaaataactgagtcatttca 451  Q
    ||||| ||||||| |||||||||||| | |||||||| || ||||||||| |||||| |||||||||||||    
T  39976603 tactcactccgtctcataataactgagtcatttgcaaaaacaaagtgtcccaaaatatctgagtcatttca 39976533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 381 - 451
Target Start/End: Original strand, 48740416 - 48740485
Alignment:
Q  381 tactccctccgtcccataataactgaattatttgcaataaaaaagtgtcctaaaataactgagtcatttca 451  Q
    ||||||||||||| |||||||||||| | |||||||| |||||| ||||  ||||||||||||||||||||    
T  48740416 tactccctccgtctcataataactgagtcatttgcaa-aaaaaaatgtctcaaaataactgagtcatttca 48740485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 381 - 451
Target Start/End: Original strand, 49812125 - 49812194
Alignment:
Q  381 tactccctccgtcccataataactgaattatttgcaataaaaaagtgtcctaaaataactgagtcatttca 451  Q
    |||||||| |||||||||||||  || |||||||||| |||||| ||||| ||||||||||||||||||||    
T  49812125 tactcccttcgtcccataataatagagttatttgcaaaaaaaaa-tgtcccaaaataactgagtcatttca 49812194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 380 - 449
Target Start/End: Complemental strand, 42186009 - 42185940
Alignment:
Q  380 ctactccctccgtcccataataactgaattatttgcaataaaaaagtgtcctaaaataactgagtcattt 449  Q
    ||||| || |||||||||||||||||| | |||| |||||||||| ||||| ||||||| ||||||||||    
T  42186009 ctacttccaccgtcccataataactgagtcattttcaataaaaaaatgtcccaaaataagtgagtcattt 42185940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 381 - 451
Target Start/End: Original strand, 25390611 - 25390686
Alignment:
Q  381 tactccctccgtcccataataactgaattatttgc-----aataaaaaagtgtcctaaaataactgagtcatttca 451  Q
    |||||||||||||||||||||||||| | ||||||     || |||||||||||| |||||||||||| |||||||    
T  25390611 tactccctccgtcccataataactgagtcatttgcaacaaaaaaaaaaagtgtcccaaaataactgagccatttca 25390686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 381 - 443
Target Start/End: Complemental strand, 41710356 - 41710294
Alignment:
Q  381 tactccctccgtcccataataactgaattatttgcaataaaaaagtgtcctaaaataactgag 443  Q
    |||||| |||||| |||||||||||| | |||| |||||||||||||||| ||||||| ||||    
T  41710356 tactccatccgtctcataataactgagtcattttcaataaaaaagtgtcccaaaataagtgag 41710294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 381 - 451
Target Start/End: Original strand, 43420920 - 43420990
Alignment:
Q  381 tactccctccgtcccataataactgaattatttgcaataaaaaagtgtcctaaaataactgagtcatttca 451  Q
    |||||||||||||||| ||||||||| |  ||||||| |||||| ||| | |||||||||||| |||||||    
T  43420920 tactccctccgtcccacaataactgattcttttgcaaaaaaaaaatgttccaaaataactgagccatttca 43420990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 381 - 451
Target Start/End: Complemental strand, 1825462 - 1825390
Alignment:
Q  381 tactccctccgtcccataataactgaattatttgcaataaaaaagt--gtcctaaaataactgagtcatttca 451  Q
    ||||| ||||||||||||| |||||| | |||||||| ||||||    |||||||||||||||||||||||||    
T  1825462 tactctctccgtcccataacaactgagtcatttgcaacaaaaaaaaaagtcctaaaataactgagtcatttca 1825390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 451
Target Start/End: Original strand, 42544108 - 42544174
Alignment:
Q  384 tccctccgtcccataataactgaattatttgcaataaaaaagtgtcctaaaataactgagtcatttca 451  Q
    |||||||||| ||||||||||||   |||| ||| ||||||||||| |||||||| ||||||||||||    
T  42544108 tccctccgtctcataataactgagccattttcaa-aaaaaagtgtcataaaataaatgagtcatttca 42544174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 381 - 451
Target Start/End: Complemental strand, 283689 - 283619
Alignment:
Q  381 tactccctccgtcccataataactgaattatttgcaataaaaaagtgtcctaaaataactgagtcatttca 451  Q
    ||||| |||||||||||||||||| | | |||||||| || ||||||||| |||||| || || |||||||    
T  283689 tactcactccgtcccataataactaagtcatttgcaaaaacaaagtgtcccaaaatatctaagccatttca 283619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 381 - 451
Target Start/End: Complemental strand, 39258488 - 39258419
Alignment:
Q  381 tactccctccgtcccataataactgaattatttgcaataaaaaagtgtcctaaaataactgagtcatttca 451  Q
    |||||||||| ||||||||||||||| | ||||| || |||||| | | ||||||||| ||||||||||||    
T  39258488 tactccctccatcccataataactgagtcatttgtaa-aaaaaaatatactaaaataattgagtcatttca 39258419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 422
Target Start/End: Complemental strand, 20964506 - 20964465
Alignment:
Q  381 tactccctccgtcccataataactgaattatttgcaataaaa 422  Q
    |||||||||||||||||||||||||| | |||||||| ||||    
T  20964506 tactccctccgtcccataataactgagtcatttgcaaaaaaa 20964465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 451
Target Start/End: Original strand, 34020939 - 34021000
Alignment:
Q  390 cgtcccataataactgaattatttgcaataaaaaagtgtcctaaaataactgagtcatttca 451  Q
    |||||||||||||| || | |||||||| |||||| ||||  ||||||| ||||||||||||    
T  34020939 cgtcccataataaccgagtcatttgcaaaaaaaaaatgtctcaaaataagtgagtcatttca 34021000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 380 - 424
Target Start/End: Complemental strand, 47386699 - 47386655
Alignment:
Q  380 ctactccctccgtcccataataactgaattatttgcaataaaaaa 424  Q
    ||||||||||||||||||||||| ||| | |||||||| ||||||    
T  47386699 ctactccctccgtcccataataagtgagtcatttgcaaaaaaaaa 47386655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 380 - 451
Target Start/End: Complemental strand, 38252651 - 38252580
Alignment:
Q  380 ctactccctccgtcccataataactgaattatttgcaataaaaaagtgtcctaaaataactgagtcatttca 451  Q
    ||||||||||||||||||||||||||| | |||||||| |||||||||||| |||||||||||  |||||||    
T  38252651 ctactccctccgtcccataataactgagtcatttgcaaaaaaaaagtgtcccaaaataactgaaccatttca 38252580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 381 - 443
Target Start/End: Original strand, 2119611 - 2119673
Alignment:
Q  381 tactccctccgtcccataataactgaattatttgcaataaaaaagtgtcctaaaataactgag 443  Q
    |||||||||||| ||||||||||||| | ||||| ||| ||||||||||| ||||||||||||    
T  2119611 tactccctccgttccataataactgagtcatttgtaattaaaaagtgtcccaaaataactgag 2119673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 381 - 451
Target Start/End: Complemental strand, 44790634 - 44790565
Alignment:
Q  381 tactccctccgtcccataataactgaattatttgcaataaaaaagtgtcctaaaataactgagtcatttca 451  Q
    ||||||||||||||||||||||||||  ||||||||| |||||||||||| ||||||| | || |||||||    
T  44790634 tactccctccgtcccataataactgagctatttgcaa-aaaaaagtgtcccaaaataattaagccatttca 44790565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 381 - 448
Target Start/End: Original strand, 34132976 - 34133043
Alignment:
Q  381 tactccctccgtcccataataactgaattatttgcaataaaaaagtgtcctaaaataactgagtcatt 448  Q
    |||||||||||||| | ||||||||||  |||| ||| ||||| |||||| |||||||||||||||||    
T  34132976 tactccctccgtcctaaaataactgaaccatttacaaaaaaaatgtgtcccaaaataactgagtcatt 34133043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 381 - 451
Target Start/End: Original strand, 5391943 - 5392013
Alignment:
Q  381 tactccctccgtcccataataactgaattatttgcaataaaaaagtgtcctaaaataactgagtcatttca 451  Q
    |||||||||||| ||||||||  |||   |||||||| |||||||||||  ||||||||||||||||||||    
T  5391943 tactccctccgttccataatatttgagccatttgcaaaaaaaaagtgtctcaaaataactgagtcatttca 5392013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 381 - 451
Target Start/End: Complemental strand, 32967489 - 32967419
Alignment:
Q  381 tactccctccgtcccataataactgaattatttgcaataaaaaagtgtcctaaaataactgagtcatttca 451  Q
    |||||| ||||||||||||||||||| | |||||||| ||||||||||   ||||||||  ||||||||||    
T  32967489 tactccatccgtcccataataactgagtcatttgcaaaaaaaaagtgtttcaaaataacctagtcatttca 32967419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 381 - 451
Target Start/End: Original strand, 138929 - 138998
Alignment:
Q  381 tactccctccgtcccataataactgaattatttgcaataaaaaagtgtcctaaaataactgagtcatttca 451  Q
    |||||| |||||||||||||||||||   |||||| | |||||| ||||| |||||||| |||||||||||    
T  138929 tactccatccgtcccataataactgagccatttgcga-aaaaaaatgtcccaaaataaccgagtcatttca 138998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 419 - 449
Target Start/End: Complemental strand, 5962648 - 5962618
Alignment:
Q  419 aaaaaagtgtcctaaaataactgagtcattt 449  Q
    |||||||||||||||||||||||||||||||    
T  5962648 aaaaaagtgtcctaaaataactgagtcattt 5962618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 381 - 451
Target Start/End: Original strand, 21587171 - 21587241
Alignment:
Q  381 tactccctccgtcccataataactgaattatttgcaataaaaaagtgtcctaaaataactgagtcatttca 451  Q
    ||||| ||||||| |||||||||||| | |||| ||| || ||||||||| |||||| ||||| |||||||    
T  21587171 tactcactccgtctcataataactgagtcattttcaaaaacaaagtgtcccaaaatatctgagccatttca 21587241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 381 - 451
Target Start/End: Original strand, 28802662 - 28802732
Alignment:
Q  381 tactccctccgtcccataataactgaattatttgcaataaaaaagtgtcctaaaataactgagtcatttca 451  Q
    |||| ||| ||||||||||||||||| | |||| |||||||||||||||  ||||||| | || |||||||    
T  28802662 tacttccttcgtcccataataactgagtcattttcaataaaaaagtgtcacaaaataagtcagccatttca 28802732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 381 - 451
Target Start/End: Complemental strand, 31410820 - 31410750
Alignment:
Q  381 tactccctccgtcccataataactgaattatttgcaataaaaaagtgtcctaaaataactgagtcatttca 451  Q
    |||||| ||| |||||||||||||||| || ||  || | |||| ||| ||||||||||||||||||||||    
T  31410820 tactccatccatcccataataactgaactaatttaaaaataaaaatgtactaaaataactgagtcatttca 31410750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 385 - 451
Target Start/End: Complemental strand, 34287287 - 34287221
Alignment:
Q  385 ccctccgtcccataataactgaattatttgcaataaaaaagtgtcctaaaataactgagtcatttca 451  Q
    |||||||||||||||||| ||||  |||| | | ||||| |||| | ||||||||||||||||||||    
T  34287287 ccctccgtcccataataattgaaccatttacgaaaaaaatgtgttccaaaataactgagtcatttca 34287221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 417
Target Start/End: Complemental strand, 10729133 - 10729096
Alignment:
Q  380 ctactccctccgtcccataataactgaattatttgcaa 417  Q
    ||||||||||||||||||||||||||| | ||||||||    
T  10729133 ctactccctccgtcccataataactgagtcatttgcaa 10729096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 422
Target Start/End: Original strand, 14689855 - 14689896
Alignment:
Q  381 tactccctccgtcccataataactgaattatttgcaataaaa 422  Q
    |||||||||||||||||||||||||| | |||||||| ||||    
T  14689855 tactccctccgtcccataataactgagtcatttgcaaaaaaa 14689896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 422
Target Start/End: Original strand, 29451243 - 29451284
Alignment:
Q  381 tactccctccgtcccataataactgaattatttgcaataaaa 422  Q
    |||||| ||||||||||||||||||||| |||||||| ||||    
T  29451243 tactccatccgtcccataataactgaatcatttgcaaaaaaa 29451284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 380 - 451
Target Start/End: Complemental strand, 21585623 - 21585552
Alignment:
Q  380 ctactccctccgtcccataataactgaattatttgcaataaaaaagtgtcctaaaataactgagtcatttca 451  Q
    |||||| |||||| ||||||||||||| | |||| |||||||||||||||| ||||||||||||||||||||    
T  21585623 ctactctctccgttccataataactgagtcattttcaataaaaaagtgtcccaaaataactgagtcatttca 21585552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 381 - 451
Target Start/End: Complemental strand, 26134915 - 26134845
Alignment:
Q  381 tactccctccgtcccataataactgaattatttgcaataaaaaagtgtcctaaaataactgagtcatttca 451  Q
    |||||| ||||||||||||||||||| | |||| |||||||||||||| ||||||||| ||||||||||||    
T  26134915 tactccttccgtcccataataactgactcattttcaataaaaaagtgttctaaaataagtgagtcatttca 26134845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 381 - 451
Target Start/End: Complemental strand, 38601017 - 38600947
Alignment:
Q  381 tactccctccgtcccataataactgaattatttgcaataaaaaagtgtcctaaaataactgagtcatttca 451  Q
    |||||||||||||||||||||||||| | |||||||| |||||| ||| ||||||||| ||||||||||||    
T  38601017 tactccctccgtcccataataactgagtcatttgcaaaaaaaaattgttctaaaataattgagtcatttca 38600947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 381 - 451
Target Start/End: Complemental strand, 1334987 - 1334917
Alignment:
Q  381 tactccctccgtcccataataactgaattatttgcaataaaaaagtgtcctaaaataactgagtcatttca 451  Q
    |||||||||||||||||||||||||| | |||||||| |||||  ||| ||||||||| ||||||||||||    
T  1334987 tactccctccgtcccataataactgagtcatttgcaaaaaaaagttgttctaaaataattgagtcatttca 1334917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 381 - 453
Target Start/End: Complemental strand, 39365229 - 39365157
Alignment:
Q  381 tactccctccgtcccataataactgaattatttgcaataaaaaagtgtcctaaaataactgagtcatttcaat 453  Q
    ||||||||||||||||||||||||||   |||| | | |||||||||||| |||||||||||| |||||||||    
T  39365229 tactccctccgtcccataataactgagccatttaccaaaaaaaagtgtcccaaaataactgagccatttcaat 39365157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 381 - 451
Target Start/End: Complemental strand, 32023312 - 32023243
Alignment:
Q  381 tactccctccgtcccataataactgaattatttgcaataaaaaagtgtcctaaaataactgagtcatttca 451  Q
    |||||||| ||||||||||||||||| | | |||||| ||||||  |||||||||||||||||||||||||    
T  32023312 tactcccttcgtcccataataactgagtcaattgcaaaaaaaaaa-gtcctaaaataactgagtcatttca 32023243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 381 - 451
Target Start/End: Complemental strand, 36097868 - 36097798
Alignment:
Q  381 tactccctccgtcccataataactgaattatttgcaataaaaaagtgtcctaaaataactgagtcatttca 451  Q
    ||||| ||||||| |||||||||||| | |||||||| || ||||||||| |||||| ||||| |||||||    
T  36097868 tactcactccgtctcataataactgagtcatttgcaaaaacaaagtgtcccaaaatatctgagccatttca 36097798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 380 - 424
Target Start/End: Complemental strand, 43640784 - 43640740
Alignment:
Q  380 ctactccctccgtcccataataactgaattatttgcaataaaaaa 424  Q
    |||||||||| |||||||||||||||| |||||||||| ||||||    
T  43640784 ctactccctctgtcccataataactgagttatttgcaaaaaaaaa 43640740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 381 - 451
Target Start/End: Original strand, 33994553 - 33994622
Alignment:
Q  381 tactccctccgtcccataataactgaattatttgcaataaaaaagtgtcctaaaataactgagtcatttca 451  Q
    |||||||||||||  |||||||||||   |||||||  |||||| ||||| ||||||||||||||||||||    
T  33994553 tactccctccgtcaaataataactgagccatttgcacaaaaaaa-tgtccaaaaataactgagtcatttca 33994622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 381 - 435
Target Start/End: Complemental strand, 39329962 - 39329908
Alignment:
Q  381 tactccctccgtcccataataactgaattatttgcaataaaaaagtgtcctaaaa 435  Q
    |||||||||||||||||||||| ||| | |||||||| |||| | ||||||||||    
T  39329962 tactccctccgtcccataataaatgagtcatttgcaaaaaaatattgtcctaaaa 39329908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 387 - 449
Target Start/End: Original strand, 48744126 - 48744188
Alignment:
Q  387 ctccgtcccataataactgaattatttgcaataaaaaagtgtcctaaaataactgagtcattt 449  Q
    ||||||||||||||||||||   |||||||| ||||||  |||| ||||||||| ||||||||    
T  48744126 ctccgtcccataataactgagccatttgcaaaaaaaaaaagtcccaaaataactaagtcattt 48744188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 380 - 449
Target Start/End: Complemental strand, 54458521 - 54458454
Alignment:
Q  380 ctactccctccgtcccataataactgaattatttgcaataaaaaagtgtcctaaaataactgagtcattt 449  Q
    ||||||||||  |||||||||||||||||  ||||||  |||||| ||||| ||||||||||||| ||||    
T  54458521 ctactccctctatcccataataactgaatcgtttgca--aaaaaattgtcccaaaataactgagtaattt 54458454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 384 - 416
Target Start/End: Complemental strand, 54845738 - 54845706
Alignment:
Q  384 tccctccgtcccataataactgaattatttgca 416  Q
    |||||||||||||||||||||||| ||||||||    
T  54845738 tccctccgtcccataataactgaactatttgca 54845706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 381 - 451
Target Start/End: Original strand, 28572106 - 28572176
Alignment:
Q  381 tactccctccgtcccataataactgaattatttgcaataaaaaagtgtcctaaaataactgagtcatttca 451  Q
    |||||||||||||||| |||||||||   ||||||||  ||||||||||| ||||||||||||||||||||    
T  28572106 tactccctccgtcccacaataactgagacatttgcaaataaaaagtgtcccaaaataactgagtcatttca 28572176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 381 - 451
Target Start/End: Original strand, 33751356 - 33751426
Alignment:
Q  381 tactccctccgtcccataataactgaattatttgcaataaaaaagtgtcctaaaataactgagtcatttca 451  Q
    ||||||||||||| |||| ||||||||  |||| |||||||||||||||| ||||||| ||||||||||||    
T  33751356 tactccctccgtctcatactaactgaaccattttcaataaaaaagtgtccaaaaataaatgagtcatttca 33751426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 381 - 457
Target Start/End: Complemental strand, 10394457 - 10394380
Alignment:
Q  381 tactccctccgtcccataataactgaattatttgcaataaaaaagtgtcctaaaataactgagtca-tttcaatacaa 457  Q
    ||||||||||||||||||||||||||   |||| | | || ||||||||| ||||||||||||||| |||||||||||    
T  10394457 tactccctccgtcccataataactgagccattttccaaaataaagtgtcccaaaataactgagtcattttcaatacaa 10394380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 381 - 449
Target Start/End: Original strand, 40964948 - 40965016
Alignment:
Q  381 tactccctccgtcccataataactgaattatttgcaataaaaaagtgtcctaaaataactgagtcattt 449  Q
    ||||||||| |||||||||||||||| | |||||||| ||| || ||||| ||||||||||||| ||||    
T  40964948 tactccctcagtcccataataactgagtcatttgcaaaaaagaaatgtcccaaaataactgagttattt 40965016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 381 - 451
Target Start/End: Original strand, 3100294 - 3100365
Alignment:
Q  381 tactccctccgtcccataataactgaattatttgcaataaaa-aagtgtcctaaaataactgagtcatttca 451  Q
    |||||||||||||||| |||||||||   |||||||| |||| |||||||  ||||||||||||||||||||    
T  3100294 tactccctccgtcccacaataactgagccatttgcaaaaaaaaaagtgtctcaaaataactgagtcatttca 3100365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 380 - 451
Target Start/End: Original strand, 7213369 - 7213440
Alignment:
Q  380 ctactccctccgtcccataataactgaattatttgcaataaaaaagtgtcctaaaataactgagtcatttca 451  Q
    ||||||||||||||||||||||| ||| | |||||||| ||| |||||||| ||||||| | | ||||||||    
T  7213369 ctactccctccgtcccataataagtgagtcatttgcaaaaaataagtgtcccaaaataattaaatcatttca 7213440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 382 - 451
Target Start/End: Original strand, 10818517 - 10818585
Alignment:
Q  382 actccctccgtcccataataactgaattatttgcaataaaaaagtgtcctaaaataactgagtcatttca 451  Q
    |||||||| ||||||||||| |||| | |||| ||||||||| |||||  ||||||||||||||||||||    
T  10818517 actccctctgtcccataatatctgagtcattttcaataaaaa-gtgtctcaaaataactgagtcatttca 10818585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 381 - 449
Target Start/End: Original strand, 564992 - 565060
Alignment:
Q  381 tactccctccgtcccataataactgaattatttgcaataaaaaagtgtcctaaaataactgagtcattt 449  Q
    ||||||||||||||||||||| || | | | |||||| |||||||||||| ||||||||| | ||||||    
T  564992 tactccctccgtcccataatagctcagtcacttgcaagaaaaaagtgtcccaaaataactaaatcattt 565060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 384 - 451
Target Start/End: Original strand, 24451680 - 24451748
Alignment:
Q  384 tccctccgtcccataataactgaattatttgcaat-aaaaaagtgtcctaaaataactgagtcatttca 451  Q
    |||||||||||||||||||||||   |||| |||| |||||||| ||| ||||||||| ||||||||||    
T  24451680 tccctccgtcccataataactgagccattttcaataaaaaaagtatcccaaaataactaagtcatttca 24451748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 436
Target Start/End: Complemental strand, 30757779 - 30757724
Alignment:
Q  381 tactccctccgtcccataataactgaattatttgcaataaaaaagtgtcctaaaat 436  Q
    ||||||||||||||||||||||||||   |||||||| | |||||||||| |||||    
T  30757779 tactccctccgtcccataataactgagccatttgcaaaagaaaagtgtccaaaaat 30757724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 381 - 451
Target Start/End: Original strand, 3123539 - 3123608
Alignment:
Q  381 tactccctccgtcccataataactgaattatttgcaataaaaaagtgtcctaaaataactgagtcatttca 451  Q
    |||||||||||||||||||||||||| | | |||||| ||||||   ||  ||||||||||||||||||||    
T  3123539 tactccctccgtcccataataactgagtcaattgcaaaaaaaaaaa-tctcaaaataactgagtcatttca 3123608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 384 - 442
Target Start/End: Original strand, 12872898 - 12872956
Alignment:
Q  384 tccctccgtcccataataactgaattatttgcaataaaaaagtgtcctaaaataactga 442  Q
    ||||||||||||| ||||||||| || |||||||||||| | ||| | |||||||||||    
T  12872898 tccctccgtcccaaaataactgagttttttgcaataaaatattgtaccaaaataactga 12872956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 381 - 451
Target Start/End: Complemental strand, 18181426 - 18181356
Alignment:
Q  381 tactccctccgtcccataataactgaattatttgcaataaaaaagtgtcctaaaataactgagtcatttca 451  Q
    ||||||||||||||||||||||||||  | |||| |  |||| | |||||||||||||||||  |||||||    
T  18181426 tactccctccgtcccataataactgagctttttgtagaaaaatattgtcctaaaataactgacccatttca 18181356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 385 - 451
Target Start/End: Original strand, 28301337 - 28301403
Alignment:
Q  385 ccctccgtcccataataactgaattatttgcaataaaaaagtgtcctaaaataactgagtcatttca 451  Q
    |||||||||||||||||||||| |  |||   |||||||| ||| ||||||||| ||||||||||||    
T  28301337 ccctccgtcccataataactgagtcgtttttcataaaaaaatgttctaaaataaatgagtcatttca 28301403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 378 - 451
Target Start/End: Complemental strand, 37248100 - 37248026
Alignment:
Q  378 tgctactccctccgtcccataataactgaattatttgcaat-aaaaaagtgtcctaaaataactgagtcatttca 451  Q
    ||||||||||||||||| ||||||| ||| | |||| |||| |||||||| ||| ||||||| |||||| |||||    
T  37248100 tgctactccctccgtccaataataattgagtcattttcaataaaaaaagtatcccaaaataagtgagtcgtttca 37248026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 381 - 451
Target Start/End: Complemental strand, 44534698 - 44534629
Alignment:
Q  381 tactccctccgtcccataataactgaattatttgcaataaaaaagtgtcctaaaataactgagtcatttca 451  Q
    |||||| ||||||||| ||||||||| | |||| ||| |||||| ||||  ||||||||||||||||||||    
T  44534698 tactccatccgtcccacaataactgagtcatttacaaaaaaaaa-tgtctcaaaataactgagtcatttca 44534629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 422
Target Start/End: Complemental strand, 20696993 - 20696952
Alignment:
Q  381 tactccctccgtcccataataactgaattatttgcaataaaa 422  Q
    |||||||||||||||||||||||||| | |||||||| ||||    
T  20696993 tactccctccgtcccataataactgagtcatttgcaaaaaaa 20696952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 382 - 422
Target Start/End: Original strand, 13221965 - 13222005
Alignment:
Q  382 actccctccgtcccataataactgaattatttgcaataaaa 422  Q
    ||||||||||||||||||||||||| | |||||||| ||||    
T  13221965 actccctccgtcccataataactgagtcatttgcaaaaaaa 13222005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 381 - 453
Target Start/End: Original strand, 31348406 - 31348478
Alignment:
Q  381 tactccctccgtcccataataactgaattatttgcaataaaaaagtgtcctaaaataactgagtcatttcaat 453  Q
    ||||||||||||||||||||||||||   |||||||| |||| | ||||||| || || |||  |||||||||    
T  31348406 tactccctccgtcccataataactgagccatttgcaaaaaaatattgtcctagaaaaattgacccatttcaat 31348478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 381 - 451
Target Start/End: Complemental strand, 11426082 - 11426012
Alignment:
Q  381 tactccctccgtcccataataactgaattatttgcaataaaaaagtgtcctaaaataactgagtcatttca 451  Q
    |||||| |||||||||||||| | ||   |||| |||||||||||||||||||||||||||||||||||||    
T  11426082 tactccttccgtcccataataccggagccattttcaataaaaaagtgtcctaaaataactgagtcatttca 11426012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 384 - 451
Target Start/End: Original strand, 16039975 - 16040042
Alignment:
Q  384 tccctccgtcccataataactgaattatttgcaataaaaaagtgtcctaaaataactgagtcatttca 451  Q
    ||||||| ||||||||||||||| | |||| |||||||||| |||  |||||||||||||||||||||    
T  16039975 tccctccatcccataataactgagtcattttcaataaaaaaatgttttaaaataactgagtcatttca 16040042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 389 - 443
Target Start/End: Original strand, 8773141 - 8773195
Alignment:
Q  389 ccgtcccataataactgaattatttgcaataaaaaagtgtcctaaaataactgag 443  Q
    |||||||||||||||||| | |||||||| |||||||||||| ||||||||||||    
T  8773141 ccgtcccataataactgagtcatttgcaaaaaaaaagtgtcccaaaataactgag 8773195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 381 - 451
Target Start/End: Original strand, 27698707 - 27698777
Alignment:
Q  381 tactccctccgtcccataataactgaattatttgcaataaaaaagtgtcctaaaataactgagtcatttca 451  Q
    ||||| |||||| ||||||||| ||| | |||| ||| |||||||||||||||||||| ||||||||||||    
T  27698707 tactcactccgttccataataattgagtcatttacaaaaaaaaagtgtcctaaaataattgagtcatttca 27698777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 381 - 451
Target Start/End: Original strand, 46495913 - 46495983
Alignment:
Q  381 tactccctccgtcccataataactgaattatttgcaataaaaaagtgtcctaaaataactgagtcatttca 451  Q
    |||||| ||| || |||||||||||||| |||| |||||||||||||||  ||||||| ||||||||||||    
T  46495913 tactccgtccatctcataataactgaatcattttcaataaaaaagtgtctcaaaataagtgagtcatttca 46495983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 381 - 451
Target Start/End: Complemental strand, 4466367 - 4466297
Alignment:
Q  381 tactccctccgtcccataataactgaattatttgcaataaaaaagtgtcctaaaataactgagtcatttca 451  Q
    ||||||||| || ||||||||||| | | |||| |||||||||||||||  ||||||| ||||||||||||    
T  4466367 tactccctctgttccataataactaagtcattttcaataaaaaagtgtctcaaaataattgagtcatttca 4466297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 383 - 451
Target Start/End: Original strand, 46536236 - 46536305
Alignment:
Q  383 ctccctccgtcccataataactgaattatttgca-ataaaaaagtgtcctaaaataactgagtcatttca 451  Q
    |||||| ||||| ||||||||||| | ||||||| | |||||||||||  ||||||||||||||||||||    
T  46536236 ctcccttcgtcctataataactgattcatttgcacacaaaaaagtgtctcaaaataactgagtcatttca 46536305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 380 - 451
Target Start/End: Complemental strand, 45889465 - 45889391
Alignment:
Q  380 ctactccctccgtcccataataactgaattatttgcaataaaaaa---gtgtcctaaaataactgagtcatttca 451  Q
    |||||||||| |||||||||||||||| | ||||  |||||||||   |||||| ||||||| ||||||||||||    
T  45889465 ctactccctcggtcccataataactgagtcatttttaataaaaaaaaagtgtcccaaaataagtgagtcatttca 45889391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 381 - 451
Target Start/End: Complemental strand, 17724927 - 17724857
Alignment:
Q  381 tactccctccgtcccataataactgaattatttgcaataaaaaagtgtcctaaaataactgagtcatttca 451  Q
    |||||| || ||| |||||||||||| | ||||  ||||||||||||||  ||||||| ||||||||||||    
T  17724927 tactccatctgtctcataataactgagtcatttctaataaaaaagtgtctcaaaataattgagtcatttca 17724857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 422
Target Start/End: Original strand, 2886066 - 2886107
Alignment:
Q  381 tactccctccgtcccataataactgaattatttgcaataaaa 422  Q
    |||||||||||||||||||||||||| | |||||||| ||||    
T  2886066 tactccctccgtcccataataactgagtcatttgcaaaaaaa 2886107  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 451
Target Start/End: Complemental strand, 3555762 - 3555698
Alignment:
Q  386 cctccgtcccataataactgaattatttgcaataaaaaagtgtcctaaaataactgagtcatttca 451  Q
    ||||||||||||||||||||| | ||||  ||| ||||||||||| ||||||| ||||| ||||||    
T  3555762 cctccgtcccataataactgagtcatttttaat-aaaaagtgtcccaaaataagtgagttatttca 3555698  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 451
Target Start/End: Original strand, 7787568 - 7787642
Alignment:
Q  381 tactccctccgtcccataataactgaattatttg----caataaaaaagtgtcctaaaataactgagtcatttca 451  Q
    |||||||||||||||||||||||||| | |||||    ||| |||||| ||||  |||||||||||| |||||||    
T  7787568 tactccctccgtcccataataactgagtcatttgcacacaaaaaaaaaatgtctaaaaataactgagccatttca 7787642  T

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Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 449
Target Start/End: Complemental strand, 19533125 - 19533064
Alignment:
Q  388 tccgtcccataataactgaattatttgcaataaaaaagtgtcctaaaataactgagtcattt 449  Q
    |||||||| |||||||||| | |||||||| ||||||   ||| ||||||||||||||||||    
T  19533125 tccgtcccgtaataactgagtcatttgcaaaaaaaaaaaatcccaaaataactgagtcattt 19533064  T

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Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 410 - 451
Target Start/End: Complemental strand, 51749367 - 51749326
Alignment:
Q  410 atttgcaataaaaaagtgtcctaaaataactgagtcatttca 451  Q
    |||| |||||||||| ||||||||||||| ||||||||||||    
T  51749367 attttcaataaaaaaatgtcctaaaataagtgagtcatttca 51749326  T

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Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 449
Target Start/End: Original strand, 52432202 - 52432275
Alignment:
Q  381 tactccctccgtcccataataactgaattatttgcaataaaaa-----agtgtcctaaaataactgagtcattt 449  Q
    |||||||||||||||  ||||||||| |||||||||| |||||     |||||||||||||||||  |||||||    
T  52432202 tactccctccgtccctcaataactgagttatttgcaaaaaaaaaaaatagtgtcctaaaataactaggtcattt 52432275  T

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Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 392 - 451
Target Start/End: Original strand, 28839245 - 28839305
Alignment:
Q  392 tcccataataactgaattatttgcaat-aaaaaagtgtcctaaaataactgagtcatttca 451  Q
    ||||||||||||||| | |||| |||| |||||||||| | ||||||| ||||||||||||    
T  28839245 tcccataataactgagtcattttcaataaaaaaagtgttccaaaataagtgagtcatttca 28839305  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 381 - 449
Target Start/End: Original strand, 33109268 - 33109336
Alignment:
Q  381 tactccctccgtcccataataactgaattatttgcaataaaaaagtgtcctaaaataactgagtcattt 449  Q
    ||||||||||||||||||||||||||  ||||||||| |||||||||| | |||| ||||||| |||||    
T  33109268 tactccctccgtcccataataactgagctatttgcaaaaaaaaagtgttccaaaacaactgagccattt 33109336  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 381 - 451
Target Start/End: Complemental strand, 30064160 - 30064091
Alignment:
Q  381 tactccctccgtcccataataactgaattatttgcaataaaaaagtgtcctaaaataactgagtcatttca 451  Q
    |||||| ||||||||||||||| ||| | | |||||| |||||| ||||||||||||||||||||||||||    
T  30064160 tactccttccgtcccataataattgagtcaattgcaaaaaaaaa-tgtcctaaaataactgagtcatttca 30064091  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 381 - 451
Target Start/End: Complemental strand, 3604812 - 3604742
Alignment:
Q  381 tactccctccgtcccataataactgaattatttgcaataaaaaagtgtcctaaaataactgagtcatttca 451  Q
    |||||||||||||||| |||||| ||   ||||| ||  ||||| ||||||||||||||||||||||||||    
T  3604812 tactccctccgtcccacaataacagagccatttgtaaataaaaaatgtcctaaaataactgagtcatttca 3604742  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 387 - 442
Target Start/End: Original strand, 15081324 - 15081379
Alignment:
Q  387 ctccgtcccataataactgaattatttgcaataaaaaagtgtcctaaaataactga 442  Q
    |||||||||||||||||||| | || ||| | |||||||||||| |||||||||||    
T  15081324 ctccgtcccataataactgagtcatctgcgaaaaaaaagtgtcccaaaataactga 15081379  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 424
Target Start/End: Complemental strand, 34916023 - 34915980
Alignment:
Q  381 tactccctccgtcccataataactgaattatttgcaataaaaaa 424  Q
    |||||||||||||||||||||||||| | |||||||| ||||||    
T  34916023 tactccctccgtcccataataactgagtcatttgcaaaaaaaaa 34915980  T

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Target: scaffold0034 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 389 - 451
Target Start/End: Original strand, 97962 - 98024
Alignment:
Q  389 ccgtcccataataactgaattatttgcaataaaaaagtgtcctaaaataactgagtcatttca 451  Q
    |||||||||||||||||| | |||||||| ||| |||||||  |||||||| |||||||||||    
T  97962 ccgtcccataataactgagtcatttgcaaaaaataagtgtctcaaaataaccgagtcatttca 98024  T

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Target: scaffold0001 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 381 - 448
Target Start/End: Original strand, 394672 - 394741
Alignment:
Q  381 tactccctccgtcccataataactgaattatttgca--ataaaaaagtgtcctaaaataactgagtcatt 448  Q
    |||||||||||||||||||||||||| | |||| ||  |||||||||||| | ||||||| |||||||||    
T  394672 tactccctccgtcccataataactgagtcattttcaatataaaaaagtgttccaaaataagtgagtcatt 394741  T

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Target: scaffold0045 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 428
Target Start/End: Original strand, 26218 - 26264
Alignment:
Q  381 tactccctccgtcccataataactgaattatttgcaataaaaaagtgt 428  Q
    |||||||||||||||||||||||||||  |||||||| ||||||||||    
T  26218 tactccctccgtcccataataactgaacaatttgcaa-aaaaaagtgt 26264  T

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Target: scaffold0028 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 451
Target Start/End: Original strand, 26513 - 26573
Alignment:
Q  390 cgtcccataataactgaattatttgcaataaaaaagtgtcctaaaataactgagtcatttca 451  Q
    ||||||||||||||||| | |||| |||||||||| | ||| ||||||| ||||||||||||    
T  26513 cgtcccataataactgagtcattttcaataaaaaa-tatcccaaaataaatgagtcatttca 26573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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