View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0622_low_40 (Length: 489)
Name: NF0622_low_40
Description: NF0622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0622_low_40 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 30 - 255
Target Start/End: Original strand, 30585835 - 30586060
Alignment:
| Q |
30 |
acatcttcatcccctaaatacgaagacccataaacaataaacaaattaggacaagaaagagttacaaaaatgcaataacaatcatcctacaatactcacc |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30585835 |
acatcttcatcccctaaatacgaagacccataaacaataaacaaattaggacaagaaagagttacaaaaatgcaataacaatcatcctacaatactcacc |
30585934 |
T |
|
| Q |
130 |
aatctacaaacaaaaaagcattttccctgcaagcaatacacctattaaggtgagataacttgttgagagtgatgataacctcttagttcaatctattata |
229 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
30585935 |
aatctacaaacaaaaaagcatattccctgcaagcaataaacctattaaggtgagataacttgttgagggtgatgataacctcttagttcaatctattata |
30586034 |
T |
|
| Q |
230 |
tattattaaactaatttcacatctaa |
255 |
Q |
| |
|
||||| |||||||||||||||||||| |
|
|
| T |
30586035 |
tattactaaactaatttcacatctaa |
30586060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 252 - 477
Target Start/End: Original strand, 30586417 - 30586642
Alignment:
| Q |
252 |
ctaaaaaatttacaaatattggagcagagaagggaaagaagctttttaccctggtttcttcaccgtaaacctttcaaacgtgcttccccaccaagacatg |
351 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| || |
|
|
| T |
30586417 |
ctaaaaaatttacaaatattggagcagagaagggaaagaagctttttaccctggtttcttcaccgtaaacctttcgaacgtgcttccccaccgagacctg |
30586516 |
T |
|
| Q |
352 |
atacaccccattcgctgccactaagcgcagtgttcttatttgaagatgatgccgctgacgctcaatttgaagtttgtctcgatctccgtcgatttggaga |
451 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30586517 |
atacaccccattcgctgccactaagcgcagtgctcttatttgaagatgatgccgctgacgctcaatttgaagtttgtctcgatctccgtcgatttggaga |
30586616 |
T |
|
| Q |
452 |
gtgtatccaatgattacatccattca |
477 |
Q |
| |
|
| |||||||||||||||||||||||| |
|
|
| T |
30586617 |
gcgtatccaatgattacatccattca |
30586642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 30 - 157
Target Start/End: Original strand, 21990462 - 21990587
Alignment:
| Q |
30 |
acatcttcatcccctaaatacgaagacccataaacaataaacaaattaggacaagaaagagttacaaaaatgcaataacaatcatcctacaatactcacc |
129 |
Q |
| |
|
|||||||||||||||| ||| | | ||||||||||||||||| ||||||| | ||||||||| ||||||||||| ||||| ||||| |||||| | |
|
|
| T |
21990462 |
acatcttcatcccctatatataagggcccataaacaataaacagattaggaga--aaagagttaacaaaatgcaatagtaatcaatctacattactcaac |
21990559 |
T |
|
| Q |
130 |
aatctacaaacaaaaaagcattttccct |
157 |
Q |
| |
|
| | | || |||||||||||||||||| |
|
|
| T |
21990560 |
agtttgcagccaaaaaagcattttccct |
21990587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 7 times since January 2019
Visitors: 3832