View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0622_low_42 (Length: 478)

Name: NF0622_low_42
Description: NF0622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0622_low_42
NF0622_low_42
[»] chr4 (39 HSPs)
chr4 (332-466)||(31623369-31623503)
chr4 (340-466)||(8080939-8081065)
chr4 (344-466)||(43938407-43938529)
chr4 (336-454)||(30112863-30112981)
chr4 (336-466)||(26918329-26918459)
chr4 (336-457)||(51943435-51943555)
chr4 (336-440)||(7111752-7111856)
chr4 (377-466)||(10657016-10657105)
chr4 (377-466)||(10871161-10871250)
chr4 (377-466)||(43939260-43939349)
chr4 (336-413)||(40846586-40846663)
chr4 (377-466)||(50791601-50791690)
chr4 (377-466)||(51942613-51942702)
chr4 (374-466)||(8079608-8079700)
chr4 (381-466)||(49647702-49647787)
chr4 (377-464)||(26919178-26919265)
chr4 (377-466)||(10657835-10657924)
chr4 (377-466)||(10871980-10872069)
chr4 (383-466)||(49646901-49646984)
chr4 (336-397)||(43594093-43594151)
chr4 (332-376)||(31624501-31624545)
chr4 (332-376)||(43590486-43590530)
chr4 (337-376)||(10658986-10659025)
chr4 (337-376)||(10873131-10873170)
chr4 (337-376)||(24577739-24577778)
chr4 (336-379)||(47650663-47650706)
chr4 (203-248)||(31623241-31623286)
chr4 (340-376)||(19871076-19871112)
chr4 (336-376)||(48952986-48953026)
chr4 (334-376)||(43940204-43940246)
chr4 (332-376)||(7113692-7113736)
chr4 (336-376)||(14269926-14269966)
chr4 (340-376)||(49645985-49646021)
chr4 (336-376)||(50790780-50790820)
chr4 (336-376)||(50792519-50792559)
chr4 (337-376)||(19869917-19869956)
chr4 (336-371)||(38623446-38623481)
chr4 (337-376)||(51941060-51941099)
chr4 (336-376)||(26923642-26923682)
[»] chr2 (28 HSPs)
chr2 (336-466)||(39160052-39160182)
chr2 (336-466)||(39209012-39209142)
chr2 (336-462)||(18248398-18248524)
chr2 (377-466)||(14453948-14454037)
chr2 (377-466)||(6321184-6321273)
chr2 (377-466)||(33180624-33180713)
chr2 (377-466)||(36601848-36601937)
chr2 (377-464)||(18247552-18247639)
chr2 (377-466)||(6320369-6320458)
chr2 (377-466)||(33179799-33179888)
chr2 (336-466)||(21191580-21191704)
chr2 (377-466)||(14453130-14453219)
chr2 (336-376)||(14454465-14454505)
chr2 (336-376)||(18246647-18246687)
chr2 (336-376)||(24520321-24520361)
chr2 (336-375)||(6319493-6319532)
chr2 (336-379)||(27478954-27478997)
chr2 (341-379)||(20919764-20919802)
chr2 (336-376)||(6322243-6322283)
chr2 (336-376)||(33182672-33182712)
chr2 (336-376)||(36600893-36600933)
chr2 (336-375)||(14452257-14452296)
chr2 (336-379)||(24460615-24460658)
chr2 (336-376)||(33178917-33178957)
chr2 (340-376)||(36602835-36602871)
chr2 (344-379)||(518256-518291)
chr2 (337-376)||(38932341-38932380)
chr2 (334-366)||(2291460-2291492)
[»] scaffold0014 (3 HSPs)
scaffold0014 (336-466)||(69686-69816)
scaffold0014 (374-466)||(70657-70749)
scaffold0014 (336-376)||(71655-71695)
[»] chr8 (24 HSPs)
chr8 (336-466)||(31640313-31640443)
chr8 (337-466)||(41671224-41671353)
chr8 (377-466)||(35021145-35021234)
chr8 (377-466)||(38363551-38363640)
chr8 (377-464)||(41670446-41670533)
chr8 (377-466)||(19142043-19142132)
chr8 (377-466)||(38362732-38362821)
chr8 (377-466)||(35021964-35022053)
chr8 (371-466)||(26920323-26920418)
chr8 (371-466)||(26951041-26951136)
chr8 (334-376)||(15825739-15825781)
chr8 (336-376)||(31642852-31642892)
chr8 (336-376)||(35019443-35019483)
chr8 (336-379)||(39069038-39069081)
chr8 (404-466)||(26950253-26950315)
chr8 (336-376)||(19143025-19143065)
chr8 (337-377)||(23625866-23625906)
chr8 (334-376)||(43129544-43129586)
chr8 (334-371)||(23625962-23625999)
chr8 (332-364)||(26951129-26951161)
chr8 (374-466)||(31641182-31641265)
chr8 (337-376)||(38364574-38364613)
chr8 (336-364)||(26920411-26920439)
chr8 (336-376)||(29725697-29725737)
[»] chr7 (32 HSPs)
chr7 (336-466)||(1599614-1599744)
chr7 (336-466)||(38229518-38229648)
chr7 (336-457)||(41407916-41408037)
chr7 (336-457)||(47254499-47254620)
chr7 (336-466)||(43543194-43543324)
chr7 (334-466)||(46160506-46160640)
chr7 (377-464)||(595311-595398)
chr7 (377-466)||(1600477-1600566)
chr7 (377-464)||(38226274-38226361)
chr7 (377-454)||(33980617-33980694)
chr7 (377-466)||(33981435-33981524)
chr7 (374-454)||(585047-585127)
chr7 (378-466)||(46159693-46159781)
chr7 (336-466)||(19064124-19064248)
chr7 (377-466)||(42832035-42832124)
chr7 (332-376)||(38224540-38224584)
chr7 (377-433)||(43544080-43544136)
chr7 (377-440)||(41407823-41407886)
chr7 (379-433)||(47253692-47253746)
chr7 (336-376)||(37708194-37708234)
chr7 (336-376)||(41406144-41406184)
chr7 (336-379)||(37623981-37624024)
chr7 (332-369)||(596216-596253)
chr7 (336-376)||(1602229-1602269)
chr7 (332-376)||(33982418-33982462)
chr7 (340-376)||(43544999-43545035)
chr7 (337-376)||(42825812-42825851)
chr7 (415-466)||(42832862-42832913)
chr7 (337-376)||(47252174-47252213)
chr7 (336-376)||(42833827-42833867)
chr7 (339-370)||(585997-586028)
chr7 (335-369)||(33979571-33979605)
[»] chr5 (21 HSPs)
chr5 (336-466)||(8525536-8525666)
chr5 (336-466)||(34858476-34858606)
chr5 (336-466)||(5100435-5100565)
chr5 (336-466)||(29639530-29639660)
chr5 (336-466)||(37250376-37250506)
chr5 (337-466)||(29640198-29640326)
chr5 (377-466)||(15525199-15525288)
chr5 (336-440)||(3035679-3035783)
chr5 (377-466)||(3034866-3034955)
chr5 (377-466)||(5101230-5101319)
chr5 (377-466)||(15526024-15526111)
chr5 (336-450)||(29390729-29390837)
chr5 (377-466)||(8524723-8524812)
chr5 (376-440)||(34859376-34859440)
chr5 (336-376)||(8520453-8520493)
chr5 (342-379)||(6719689-6719726)
chr5 (337-374)||(29389182-29389219)
chr5 (420-464)||(37251228-37251272)
chr5 (377-424)||(37252535-37252582)
chr5 (340-376)||(15524322-15524358)
chr5 (336-376)||(37256212-37256252)
[»] chr3 (34 HSPs)
chr3 (336-466)||(48073683-48073813)
chr3 (336-466)||(42879463-42879593)
chr3 (11-109)||(34914810-34914908)
chr3 (336-466)||(39131700-39131830)
chr3 (336-466)||(42164161-42164291)
chr3 (336-466)||(43862339-43862469)
chr3 (377-466)||(43861547-43861636)
chr3 (377-466)||(50937417-50937506)
chr3 (379-466)||(39130891-39130978)
chr3 (336-466)||(36465829-36465962)
chr3 (377-466)||(42878649-42878738)
chr3 (377-466)||(22978865-22978954)
chr3 (374-466)||(43358488-43358581)
chr3 (377-466)||(2228384-2228473)
chr3 (377-466)||(22979684-22979773)
chr3 (377-466)||(50936601-50936690)
chr3 (374-466)||(48072877-48072969)
chr3 (386-466)||(42165017-42165097)
chr3 (377-466)||(7042568-7042654)
chr3 (336-466)||(36471561-36471683)
chr3 (336-376)||(41889524-41889564)
chr3 (336-376)||(42167435-42167475)
chr3 (336-376)||(42877196-42877236)
chr3 (336-376)||(50938340-50938380)
chr3 (334-377)||(22978032-22978075)
chr3 (336-379)||(32001045-32001088)
chr3 (336-379)||(55136449-55136492)
chr3 (336-376)||(2229273-2229313)
chr3 (336-376)||(43359385-43359425)
chr3 (336-376)||(43860682-43860722)
chr3 (336-376)||(48071932-48071972)
chr3 (336-374)||(41888765-41888803)
chr3 (336-376)||(39129256-39129296)
chr3 (344-377)||(7041694-7041727)
[»] chr1 (12 HSPs)
chr1 (336-466)||(23260786-23260914)
chr1 (374-466)||(23260104-23260196)
chr1 (383-466)||(4639228-4639311)
chr1 (336-376)||(4640196-4640236)
chr1 (336-376)||(43847532-43847572)
chr1 (336-376)||(44110035-44110075)
chr1 (332-376)||(44299270-44299314)
chr1 (336-376)||(44300047-44300087)
chr1 (337-376)||(11756975-11757014)
chr1 (334-376)||(23259039-23259081)
chr1 (341-377)||(4638354-4638390)
chr1 (337-368)||(42159569-42159600)
[»] scaffold0217 (3 HSPs)
scaffold0217 (336-413)||(854-931)
scaffold0217 (377-466)||(20319-20408)
scaffold0217 (420-466)||(19541-19587)
[»] chr6 (13 HSPs)
chr6 (340-449)||(13868996-13869105)
chr6 (377-466)||(13868184-13868273)
chr6 (374-467)||(24160173-24160266)
chr6 (377-466)||(15509070-15509159)
chr6 (336-376)||(5090187-5090227)
chr6 (415-466)||(12503661-12503712)
chr6 (377-466)||(32561570-32561652)
chr6 (336-376)||(34574698-34574738)
chr6 (336-375)||(15508305-15508344)
chr6 (377-440)||(32560768-32560831)
chr6 (336-376)||(13866220-13866260)
chr6 (336-376)||(24159194-24159234)
chr6 (340-376)||(32562514-32562550)
[»] scaffold0009 (1 HSPs)
scaffold0009 (336-376)||(94507-94547)


Alignment Details
Target: chr4 (Bit Score: 119; Significance: 1e-60; HSPs: 39)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 332 - 466
Target Start/End: Original strand, 31623369 - 31623503
Alignment:
Q  332 aggacttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaat 431  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||| ||||||    
T  31623369 aggacttgtaacaattaaaatttcacatcaaattcaacccatcatatacgtttataaattttgttccattccaaaacctagaacacacataacatgcaat 31623468  T
Q  432 tttttcttcattcttcttcccatcttaattgttca 466  Q
    |||||||||||||||||||||||||||||||||||    
T  31623469 tttttcttcattcttcttcccatcttaattgttca 31623503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 340 - 466
Target Start/End: Complemental strand, 8081065 - 8080939
Alignment:
Q  340 taacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttctt 439  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||| |||||    
T  8081065 taacaattaaaattttacatcaaattcaacccatcatatacgttcataaattttgtttcattccaaaacctagaacacaaataacgtgcaatttcttctt 8080966  T
Q  440 cattcttcttcccatcttaattgttca 466  Q
    |||||||||| ||||||| ||||||||    
T  8080965 cattcttctttccatcttgattgttca 8080939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 344 - 466
Target Start/End: Original strand, 43938407 - 43938529
Alignment:
Q  344 aattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcatt 443  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||| || ||||||    
T  43938407 aattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctaaaacacacataacgtgcaatttcttgttcatt 43938506  T
Q  444 cttcttcccatcttaattgttca 466  Q
    |||||||||||||| ||||||||    
T  43938507 cttcttcccatcttgattgttca 43938529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 336 - 454
Target Start/End: Original strand, 30112863 - 30112981
Alignment:
Q  336 cttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttt 435  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||  ||||||||||||||      
T  30112863 cttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgtgccattccaaaacctagaacacgcataacgtgcaatttcc 30112962  T
Q  436 tcttcattcttcttcccat 454  Q
    |||||||| ||||||||||    
T  30112963 tcttcatttttcttcccat 30112981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 336 - 466
Target Start/End: Original strand, 26918329 - 26918459
Alignment:
Q  336 cttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttt 435  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||| | ||||  |||| |||||||| |    
T  26918329 cttgtaacaattaaaatttcacatcaaattcaactcatcatatacgcttataaattttgttccattccaaaacctataacacacgtaacatgcaatttct 26918428  T
Q  436 tcttcattcttcttcccatcttaattgttca 466  Q
    ||||||||||||||| |||||| ||||||||    
T  26918429 tcttcattcttcttctcatcttgattgttca 26918459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 336 - 457
Target Start/End: Complemental strand, 51943555 - 51943435
Alignment:
Q  336 cttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttt 435  Q
    |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||| |||| ||||| |||||||| |    
T  51943555 cttgaaacaattaaaatttcacatcaaattcaacacatcatatacgttcataaattttgttacattccaaaa-ctagaacacacataacatgcaatttct 51943457  T
Q  436 tcttcattcttcttcccatctt 457  Q
    |||||||| |||||||||||||    
T  51943456 tcttcatttttcttcccatctt 51943435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 336 - 440
Target Start/End: Original strand, 7111752 - 7111856
Alignment:
Q  336 cttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttt 435  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| | |||| |||||||||||||| |    
T  7111752 cttgtaacaattaaaatttcacatcaaattcaactcatcatatacgttcataaattttgttccattgcaaaacctataacacacataacgtgcaatttct 7111851  T
Q  436 tcttc 440  Q
    |||||    
T  7111852 tcttc 7111856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 377 - 466
Target Start/End: Original strand, 10657016 - 10657105
Alignment:
Q  377 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttca 466  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||| ||||||||||||||||||||||| ||||||||    
T  10657016 atacgttcataaattttgttccattccaaaacctagaacacacataacgtacaatttcttcttcattcttcttcccatcttgattgttca 10657105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 377 - 466
Target Start/End: Original strand, 10871161 - 10871250
Alignment:
Q  377 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttca 466  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||| ||||||||||||||||||||||| ||||||||    
T  10871161 atacgttcataaattttgttccattccaaaacctagaacacacataacgtacaatttcttcttcattcttcttcccatcttgattgttca 10871250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 377 - 466
Target Start/End: Complemental strand, 43939349 - 43939260
Alignment:
Q  377 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttca 466  Q
    ||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||| ||||||||    
T  43939349 atacgttcataaattttgttctattccaaaacctagaacacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 43939260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 336 - 413
Target Start/End: Complemental strand, 40846663 - 40846586
Alignment:
Q  336 cttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctaga 413  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| ||||||||||    
T  40846663 cttgtaacaattaaaatttcacatcaaattcaacctatcatatacgtttataaattttgttccattcaaaaacctaga 40846586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 377 - 466
Target Start/End: Complemental strand, 50791690 - 50791601
Alignment:
Q  377 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttca 466  Q
    |||||||||||||||||||||||||| |||||||||| |||| |||||||||||||| ||||||||||||||||| ||||| ||||||||    
T  50791690 atacgttcataaattttgttccattctaaaacctagaacacacataacgtgcaatttcttcttcattcttcttcctatcttgattgttca 50791601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 377 - 466
Target Start/End: Original strand, 51942613 - 51942702
Alignment:
Q  377 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttca 466  Q
    ||||||||||||| ||||||||||||||||||||||| |||| ||||| |||||||| ||||||||||||||||||||||| ||||||||    
T  51942613 atacgttcataaaatttgttccattccaaaacctagaacacacataacatgcaatttcttcttcattcttcttcccatcttgattgttca 51942702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 374 - 466
Target Start/End: Original strand, 8079608 - 8079700
Alignment:
Q  374 catatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttca 466  Q
    ||||||| ||||||||||||||| |||||||||||||||| |||| |||||||||||||| ||||||||| ||||||||||||| ||||||||    
T  8079608 catatacattcataaattttgtttcattccaaaacctagaacacacataacgtgcaatttcttcttcatttttcttcccatcttgattgttca 8079700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 381 - 466
Target Start/End: Complemental strand, 49647787 - 49647702
Alignment:
Q  381 gttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttca 466  Q
    ||||||||||||||||| ||||||||||||||| |||  |||||||||||||| ||||||||||||||||||||||| ||||||||    
T  49647787 gttcataaattttgttcaattccaaaacctagaacacgcataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 49647702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 377 - 464
Target Start/End: Complemental strand, 26919265 - 26919178
Alignment:
Q  377 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgtt 464  Q
    ||||||||||||||||||||||| ||||||||||||| || | |||||||||||||| ||||||||| ||||||||||||| ||||||    
T  26919265 atacgttcataaattttgttccactccaaaacctagaacaaacataacgtgcaatttcttcttcattattcttcccatctttattgtt 26919178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 377 - 466
Target Start/End: Complemental strand, 10657924 - 10657835
Alignment:
Q  377 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttca 466  Q
    |||| |||||||||||||||||||||||||||||||| |||| | ||| |||||||| ||||||||||||||||||||||  ||||||||    
T  10657924 atacattcataaattttgttccattccaaaacctagaacacacacaacttgcaatttcttcttcattcttcttcccatctacattgttca 10657835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 377 - 466
Target Start/End: Complemental strand, 10872069 - 10871980
Alignment:
Q  377 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttca 466  Q
    |||| |||||||||||||||||||||||||||||||| |||| | ||| |||||||| ||||||||||||||||||||||  ||||||||    
T  10872069 atacattcataaattttgttccattccaaaacctagaacacacacaacttgcaatttcttcttcattcttcttcccatctacattgttca 10871980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 383 - 466
Target Start/End: Original strand, 49646901 - 49646984
Alignment:
Q  383 tcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttca 466  Q
    ||||||||||||||| ||||||||||||||| |||| |||||||||||||| ||||||||| |||||||||||||  |||||||    
T  49646901 tcataaattttgttcaattccaaaacctagaacacacataacgtgcaatttcttcttcattattcttcccatcttggttgttca 49646984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 336 - 397
Target Start/End: Complemental strand, 43594151 - 43594093
Alignment:
Q  336 cttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttc 397  Q
    |||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||    
T  43594151 cttgtaacaattaaaatttcacatcaaattcaacc---catatacgttcataaattttgttc 43594093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 332 - 376
Target Start/End: Complemental strand, 31624545 - 31624501
Alignment:
Q  332 aggacttgtaacaattaaaatttcacatcaaattcaacccatcat 376  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    
T  31624545 aggacttgtaacaattaaaatttcacatcaaattcaacacatcat 31624501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 332 - 376
Target Start/End: Original strand, 43590486 - 43590530
Alignment:
Q  332 aggacttgtaacaattaaaatttcacatcaaattcaacccatcat 376  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
T  43590486 aggacttgtaacaattaaaatttaacatcaaattcaacccatcat 43590530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 337 - 376
Target Start/End: Complemental strand, 10659025 - 10658986
Alignment:
Q  337 ttgtaacaattaaaatttcacatcaaattcaacccatcat 376  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  10659025 ttgtaacaattaaaatttcacatcaaattcaacccatcat 10658986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 337 - 376
Target Start/End: Complemental strand, 10873170 - 10873131
Alignment:
Q  337 ttgtaacaattaaaatttcacatcaaattcaacccatcat 376  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  10873170 ttgtaacaattaaaatttcacatcaaattcaacccatcat 10873131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 337 - 376
Target Start/End: Complemental strand, 24577778 - 24577739
Alignment:
Q  337 ttgtaacaattaaaatttcacatcaaattcaacccatcat 376  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  24577778 ttgtaacaattaaaatttcacatcaaattcaacccatcat 24577739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 336 - 379
Target Start/End: Complemental strand, 47650706 - 47650663
Alignment:
Q  336 cttgtaacaattaaaatttcacatcaaattcaacccatcatata 379  Q
    |||||||||||||||||||||||||||||| |||||||||||||    
T  47650706 cttgtaacaattaaaatttcacatcaaatttaacccatcatata 47650663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 203 - 248
Target Start/End: Original strand, 31623241 - 31623286
Alignment:
Q  203 gatatcaaccaatcaaaatgtcagataaatgaattaatttttctat 248  Q
    ||||||||||||||||||||||| |||||||||| |||||||||||    
T  31623241 gatatcaaccaatcaaaatgtcaaataaatgaatcaatttttctat 31623286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 340 - 376
Target Start/End: Complemental strand, 19871112 - 19871076
Alignment:
Q  340 taacaattaaaatttcacatcaaattcaacccatcat 376  Q
    |||||||||||||||||||||||||||||||||||||    
T  19871112 taacaattaaaatttcacatcaaattcaacccatcat 19871076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 336 - 376
Target Start/End: Original strand, 48952986 - 48953026
Alignment:
Q  336 cttgtaacaattaaaatttcacatcaaattcaacccatcat 376  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  48952986 cttgtaacaattaaaatttcacatcaaattcaatccatcat 48953026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 334 - 376
Target Start/End: Complemental strand, 43940246 - 43940204
Alignment:
Q  334 gacttgtaacaattaaaatttcacatcaaattcaacccatcat 376  Q
    ||||| |||||||||||||||||||||| ||||||||||||||    
T  43940246 gacttctaacaattaaaatttcacatcatattcaacccatcat 43940204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 332 - 376
Target Start/End: Complemental strand, 7113736 - 7113692
Alignment:
Q  332 aggacttgtaacaattaaaatttcacatcaaattcaacccatcat 376  Q
    ||||| ||||||||||||||||| ||||||||||||||| |||||    
T  7113736 aggacatgtaacaattaaaattttacatcaaattcaaccgatcat 7113692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 336 - 376
Target Start/End: Complemental strand, 14269966 - 14269926
Alignment:
Q  336 cttgtaacaattaaaatttcacatcaaattcaacccatcat 376  Q
    |||||||||||||||||||||| |||||||| |||||||||    
T  14269966 cttgtaacaattaaaatttcacctcaaattcgacccatcat 14269926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 340 - 376
Target Start/End: Original strand, 49645985 - 49646021
Alignment:
Q  340 taacaattaaaatttcacatcaaattcaacccatcat 376  Q
    |||||||||||||||||||||||||||||| ||||||    
T  49645985 taacaattaaaatttcacatcaaattcaactcatcat 49646021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 336 - 376
Target Start/End: Original strand, 50790780 - 50790820
Alignment:
Q  336 cttgtaacaattaaaatttcacatcaaattcaacccatcat 376  Q
    |||| ||||||||||||||||||||||||||||| ||||||    
T  50790780 cttgcaacaattaaaatttcacatcaaattcaacacatcat 50790820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 336 - 376
Target Start/End: Complemental strand, 50792559 - 50792519
Alignment:
Q  336 cttgtaacaattaaaatttcacatcaaattcaacccatcat 376  Q
    |||||||||||||||||||||||||||||| ||| ||||||    
T  50792559 cttgtaacaattaaaatttcacatcaaattaaactcatcat 50792519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 376
Target Start/End: Original strand, 19869917 - 19869956
Alignment:
Q  337 ttgtaacaattaaaatttcacatcaaattcaacccatcat 376  Q
    ||||||||| |||||||||||||||||||||| |||||||    
T  19869917 ttgtaacaactaaaatttcacatcaaattcaatccatcat 19869956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 371
Target Start/End: Complemental strand, 38623481 - 38623446
Alignment:
Q  336 cttgtaacaattaaaatttcacatcaaattcaaccc 371  Q
    ||||||||||||||||||||||||||| ||||||||    
T  38623481 cttgtaacaattaaaatttcacatcaagttcaaccc 38623446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 376
Target Start/End: Original strand, 51941060 - 51941099
Alignment:
Q  337 ttgtaacaattaaaatttcacatcaaattcaacccatcat 376  Q
    |||||||||||||||||||||||||||||| || ||||||    
T  51941060 ttgtaacaattaaaatttcacatcaaattctactcatcat 51941099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 336 - 376
Target Start/End: Complemental strand, 26923682 - 26923642
Alignment:
Q  336 cttgtaacaattaaaatttcacatcaaattcaacccatcat 376  Q
    ||||||| ||||||||||| | |||||||||||||||||||    
T  26923682 cttgtaagaattaaaattttatatcaaattcaacccatcat 26923642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 111; Significance: 8e-56; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 336 - 466
Target Start/End: Original strand, 39160052 - 39160182
Alignment:
Q  336 cttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttt 435  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||| |    
T  39160052 cttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctagaacacacataacgtacaatttct 39160151  T
Q  436 tcttcattcttcttcccatcttaattgttca 466  Q
    |||||||||||||||||||||| ||||||||    
T  39160152 tcttcattcttcttcccatcttgattgttca 39160182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 336 - 466
Target Start/End: Complemental strand, 39209142 - 39209012
Alignment:
Q  336 cttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttt 435  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||| |    
T  39209142 cttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctagaacacacataacgtacaatttct 39209043  T
Q  436 tcttcattcttcttcccatcttaattgttca 466  Q
    |||||||||||||||||||||| ||||||||    
T  39209042 tcttcattcttcttcccatcttgattgttca 39209012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 336 - 462
Target Start/End: Complemental strand, 18248524 - 18248398
Alignment:
Q  336 cttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttt 435  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | || |||||| ||||||| |    
T  18248524 cttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgtttcattccaaaacctagaacgcaaataacgcgcaatttct 18248425  T
Q  436 tcttcattcttcttcccatcttaattg 462  Q
    |||||||||||||||||||||| ||||    
T  18248424 tcttcattcttcttcccatcttgattg 18248398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 377 - 466
Target Start/End: Complemental strand, 14454037 - 14453948
Alignment:
Q  377 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttca 466  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||| ||||||||    
T  14454037 atacgttcataaattttgttccattccaaaacctagaacacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 14453948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 377 - 466
Target Start/End: Complemental strand, 6321273 - 6321184
Alignment:
Q  377 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttca 466  Q
    |||||||||||||||||||||||||||||||| ||||  ||| |||||||||||||| ||||||||||||||||||||||| ||||||||    
T  6321273 atacgttcataaattttgttccattccaaaacatagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 6321184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 377 - 466
Target Start/End: Complemental strand, 33180713 - 33180624
Alignment:
Q  377 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttca 466  Q
    |||||||||||||||||||||||||| |||| ||||| |||| |||||||||||||| ||||||||||||||||||||||| ||||||||    
T  33180713 atacgttcataaattttgttccattctaaaatctagaacacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 33180624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 377 - 466
Target Start/End: Complemental strand, 36601937 - 36601848
Alignment:
Q  377 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttca 466  Q
    ||||||||||||||||||||| ||| ||||||||||| |||| |||||||||||||| ||||||||||||||||||||||| ||||||||    
T  36601937 atacgttcataaattttgttctatttcaaaacctagaacacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 36601848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 377 - 464
Target Start/End: Original strand, 18247552 - 18247639
Alignment:
Q  377 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgtt 464  Q
    ||||||||||||||||||||||||||||||||||||| || | ||||||||||||||  |||||||||||||||||||||| ||||||    
T  18247552 atacgttcataaattttgttccattccaaaacctagaacaaacataacgtgcaatttcatcttcattcttcttcccatcttgattgtt 18247639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 377 - 466
Target Start/End: Original strand, 6320369 - 6320458
Alignment:
Q  377 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttca 466  Q
    |||||||||||||||||||||||||| |||||||| | |||| |||||||||||||| |||||||||||| |||||||||| ||||||||    
T  6320369 atacgttcataaattttgttccattctaaaacctataacacacataacgtgcaatttcttcttcattctttttcccatctttattgttca 6320458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 377 - 466
Target Start/End: Original strand, 33179799 - 33179888
Alignment:
Q  377 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttca 466  Q
    ||||||||||||| ||| ||||||||||||||||||| |||| |||||||||||||| || |||||||||||||||||||| ||||||||    
T  33179799 atacgttcataaaattttttccattccaaaacctagaacacacataacgtgcaatttctttttcattcttcttcccatcttgattgttca 33179888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 336 - 466
Target Start/End: Complemental strand, 21191704 - 21191580
Alignment:
Q  336 cttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttt 435  Q
    |||||||||||||||||||||||||||||| |||| ||||       |||||||||| |||||||||||||||||| | || | ||||| |||| ||| |    
T  21191704 cttgtaacaattaaaatttcacatcaaatttaacctatcaa------tcataaatttggttccattccaaaacctaaaacagacataacctgcagtttct 21191611  T
Q  436 tcttcattcttcttcccatcttaattgttca 466  Q
    |||||||||||||||||||||| ||||||||    
T  21191610 tcttcattcttcttcccatcttgattgttca 21191580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 377 - 466
Target Start/End: Original strand, 14453130 - 14453219
Alignment:
Q  377 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttca 466  Q
    |||||||||||||||||||||  ||||||||  |||| || | |||||||||||||| ||||||||||||||||||||||| ||||||||    
T  14453130 atacgttcataaattttgttcagttccaaaatatagaacatacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 14453219  T

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Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 336 - 376
Target Start/End: Complemental strand, 14454505 - 14454465
Alignment:
Q  336 cttgtaacaattaaaatttcacatcaaattcaacccatcat 376  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  14454505 cttgtaacaattaaaatttcacatcaaattcaacccatcat 14454465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 336 - 376
Target Start/End: Original strand, 18246647 - 18246687
Alignment:
Q  336 cttgtaacaattaaaatttcacatcaaattcaacccatcat 376  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  18246647 cttgtaacaattaaaatttcacatcaaattcaacccatcat 18246687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 336 - 376
Target Start/End: Complemental strand, 24520361 - 24520321
Alignment:
Q  336 cttgtaacaattaaaatttcacatcaaattcaacccatcat 376  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  24520361 cttgtaacaattaaaatttcacatcaaattcaacccatcat 24520321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 336 - 375
Target Start/End: Original strand, 6319493 - 6319532
Alignment:
Q  336 cttgtaacaattaaaatttcacatcaaattcaacccatca 375  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  6319493 cttgtaacaattaaaatttcacatcaaattcaacccatca 6319532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 336 - 379
Target Start/End: Complemental strand, 27478997 - 27478954
Alignment:
Q  336 cttgtaacaattaaaatttcacatcaaattcaacccatcatata 379  Q
    |||| |||||||||||||||||||||||||||||||||||||||    
T  27478997 cttgcaacaattaaaatttcacatcaaattcaacccatcatata 27478954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 341 - 379
Target Start/End: Complemental strand, 20919802 - 20919764
Alignment:
Q  341 aacaattaaaatttcacatcaaattcaacccatcatata 379  Q
    |||||||||||||||||||||||||||||||||||||||    
T  20919802 aacaattaaaatttcacatcaaattcaacccatcatata 20919764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 336 - 376
Target Start/End: Complemental strand, 6322283 - 6322243
Alignment:
Q  336 cttgtaacaattaaaatttcacatcaaattcaacccatcat 376  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  6322283 cttgtaacaattaaaatttcatatcaaattcaacccatcat 6322243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 336 - 376
Target Start/End: Complemental strand, 33182712 - 33182672
Alignment:
Q  336 cttgtaacaattaaaatttcacatcaaattcaacccatcat 376  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  33182712 cttgtaacaattaaaatttcacatcaaattcaatccatcat 33182672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 336 - 376
Target Start/End: Original strand, 36600893 - 36600933
Alignment:
Q  336 cttgtaacaattaaaatttcacatcaaattcaacccatcat 376  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  36600893 cttgtaacaattaaaatttcacatcaaattcaatccatcat 36600933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 336 - 375
Target Start/End: Original strand, 14452257 - 14452296
Alignment:
Q  336 cttgtaacaattaaaatttcacatcaaattcaacccatca 375  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  14452257 cttgtgacaattaaaatttcacatcaaattcaacccatca 14452296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 336 - 379
Target Start/End: Complemental strand, 24460658 - 24460615
Alignment:
Q  336 cttgtaacaattaaaatttcacatcaaattcaacccatcatata 379  Q
    |||| |||||||||||||||||||||||||||| ||||||||||    
T  24460658 cttgcaacaattaaaatttcacatcaaattcaatccatcatata 24460615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 336 - 376
Target Start/End: Original strand, 33178917 - 33178957
Alignment:
Q  336 cttgtaacaattaaaatttcacatcaaattcaacccatcat 376  Q
    ||||||||||||||||||| ||||||||||||||| |||||    
T  33178917 cttgtaacaattaaaattttacatcaaattcaaccaatcat 33178957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 340 - 376
Target Start/End: Complemental strand, 36602871 - 36602835
Alignment:
Q  340 taacaattaaaatttcacatcaaattcaacccatcat 376  Q
    |||||||||||||||||||||||||||||| ||||||    
T  36602871 taacaattaaaatttcacatcaaattcaactcatcat 36602835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 344 - 379
Target Start/End: Original strand, 518256 - 518291
Alignment:
Q  344 aattaaaatttcacatcaaattcaacccatcatata 379  Q
    ||||||||||||||||||||| ||||||||||||||    
T  518256 aattaaaatttcacatcaaatccaacccatcatata 518291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 376
Target Start/End: Complemental strand, 38932380 - 38932341
Alignment:
Q  337 ttgtaacaattaaaatttcacatcaaattcaacccatcat 376  Q
    |||||||||||||||||| |||||||||| ||||||||||    
T  38932380 ttgtaacaattaaaattttacatcaaattgaacccatcat 38932341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 334 - 366
Target Start/End: Original strand, 2291460 - 2291492
Alignment:
Q  334 gacttgtaacaattaaaatttcacatcaaattc 366  Q
    ||||| |||||||||||||||||||||||||||    
T  2291460 gacttataacaattaaaatttcacatcaaattc 2291492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 103; Significance: 5e-51; HSPs: 3)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 336 - 466
Target Start/End: Original strand, 69686 - 69816
Alignment:
Q  336 cttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttt 435  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||| |||||||||||||| |    
T  69686 cttgtaacaattaaaatttcacatcaaattcaactcatcatatacgttcataaatttcgttccattccaaaacctagaacacacataacgtgcaatttct 69785  T
Q  436 tcttcattcttcttcccatcttaattgttca 466  Q
    |||||||||||||||||||||| ||| ||||    
T  69786 tcttcattcttcttcccatcttgattattca 69816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 374 - 466
Target Start/End: Complemental strand, 70749 - 70657
Alignment:
Q  374 catatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttca 466  Q
    |||||| ||||||||||||||||  ||||||||||| ||| |||| |||||||| ||||| |||||||||||||||||||||| |||||||||    
T  70749 catatatgttcataaattttgttttattccaaaaccaagaacacacataacgtgtaatttcttcttcattcttcttcccatctaaattgttca 70657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 336 - 376
Target Start/End: Complemental strand, 71695 - 71655
Alignment:
Q  336 cttgtaacaattaaaatttcacatcaaattcaacccatcat 376  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  71695 cttgtaacaattaaaatttcacatcaaattcaacccatcat 71655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 103; Significance: 5e-51; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 336 - 466
Target Start/End: Original strand, 31640313 - 31640443
Alignment:
Q  336 cttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttt 435  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||| ||||| |    
T  31640313 cttgtaaaaattaaaatttcacatcaaattcaacccatcatatacgttcatatattttgttccattccaaaacctagaacacacataacgtgtaatttct 31640412  T
Q  436 tcttcattcttcttcccatcttaattgttca 466  Q
    |||||||||||||||||||||| ||||||||    
T  31640413 tcttcattcttcttcccatcttgattgttca 31640443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 337 - 466
Target Start/End: Complemental strand, 41671353 - 41671224
Alignment:
Q  337 ttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaatttttt 436  Q
    ||||||||||||||||||||||||||||||||  ||||||||| |||||||||||||||| |||||||||||||| | |||| |||||||| ||||| ||    
T  41671353 ttgtaacaattaaaatttcacatcaaattcaatgcatcatataagttcataaattttgttacattccaaaacctaaaacacacataacgtgtaatttctt 41671254  T
Q  437 cttcattcttcttcccatcttaattgttca 466  Q
    ||||||| ||||||||||||| ||||||||    
T  41671253 cttcatttttcttcccatcttgattgttca 41671224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 377 - 466
Target Start/End: Original strand, 35021145 - 35021234
Alignment:
Q  377 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttca 466  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||| ||||||| ||||||||    
T  35021145 atacgttcataaattttgttccattccaaaacctagaacacacataacgtgcaatttcttcttcattcttctttccatcttgattgttca 35021234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 377 - 466
Target Start/End: Complemental strand, 38363640 - 38363551
Alignment:
Q  377 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttca 466  Q
    ||||||||||||||||||||||||||||||||||||| |||| | |||||||||||| ||||||||||||||||||||||| ||||||||    
T  38363640 atacgttcataaattttgttccattccaaaacctagaacacacacaacgtgcaatttcttcttcattcttcttcccatcttgattgttca 38363551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 377 - 464
Target Start/End: Original strand, 41670446 - 41670533
Alignment:
Q  377 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgtt 464  Q
    ||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||| ||||||    
T  41670446 atacgttcataaaatttgttccattccaaaacctagaacacacataacgtgcaatttcttcttcattcttcttcccatcttgattgtt 41670533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 377 - 466
Target Start/End: Complemental strand, 19142132 - 19142043
Alignment:
Q  377 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttca 466  Q
    ||||||||||||||||||||| ||||||||||||||| |||| ||||| |||||||| ||||||||||||||||||||||| ||||||||    
T  19142132 atacgttcataaattttgttctattccaaaacctagaacacacataacatgcaatttattcttcattcttcttcccatcttgattgttca 19142043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 377 - 466
Target Start/End: Original strand, 38362732 - 38362821
Alignment:
Q  377 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttca 466  Q
    |||||||||||||||||||| |||| ||||||||||| |||| |||||||||||||| ||||||||||||||||||||||| ||||||||    
T  38362732 atacgttcataaattttgttgcatttcaaaacctagaacacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 38362821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 377 - 466
Target Start/End: Complemental strand, 35022053 - 35021964
Alignment:
Q  377 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttca 466  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||| ||||| ||||||||| ||||||| ||||||||    
T  35022053 atacgttcataaattttgttccattccaaaatctagaacacatataatgtgcaatttcttctttattcttctttccatcttgattgttca 35021964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 371 - 466
Target Start/End: Complemental strand, 26920418 - 26920323
Alignment:
Q  371 catcatatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttca 466  Q
    ||||| ||||||||||||||||| ||||||||||||||||| | |||| ||||| |||||||| |||||||||||||||||||| || ||||||||    
T  26920418 catcaaatacgttcataaattttattccattccaaaacctaaaacacacataacatgcaatttcttcttcattcttcttcccatattgattgttca 26920323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 371 - 466
Target Start/End: Complemental strand, 26951136 - 26951041
Alignment:
Q  371 catcatatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttca 466  Q
    ||||| |||| |||||||||||| ||||||||||||| ||| |  ||| |||||||||||||| ||||||||||||||||||||||| ||||||||    
T  26951136 catcaaatacattcataaattttattccattccaaaatctataatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 26951041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 334 - 376
Target Start/End: Complemental strand, 15825781 - 15825739
Alignment:
Q  334 gacttgtaacaattaaaatttcacatcaaattcaacccatcat 376  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  15825781 gacttgtaacaattaaaatttcacatcaaattcaacccatcat 15825739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 336 - 376
Target Start/End: Complemental strand, 31642892 - 31642852
Alignment:
Q  336 cttgtaacaattaaaatttcacatcaaattcaacccatcat 376  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  31642892 cttgtaacaattaaaatttcacatcaaattcaacccatcat 31642852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 336 - 376
Target Start/End: Original strand, 35019443 - 35019483
Alignment:
Q  336 cttgtaacaattaaaatttcacatcaaattcaacccatcat 376  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  35019443 cttgtaacaattaaaatttcacatcaaattcaacccatcat 35019483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 336 - 379
Target Start/End: Original strand, 39069038 - 39069081
Alignment:
Q  336 cttgtaacaattaaaatttcacatcaaattcaacccatcatata 379  Q
    |||| |||||||||||||||||||||||||||||||||||||||    
T  39069038 cttgcaacaattaaaatttcacatcaaattcaacccatcatata 39069081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 404 - 466
Target Start/End: Original strand, 26950253 - 26950315
Alignment:
Q  404 aaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttca 466  Q
    |||||||| | |||| ||||||||||| || ||||||||||||||||||||||| ||||||||    
T  26950253 aaaacctataacacacataacgtgcaaattcttcttcattcttcttcccatcttgattgttca 26950315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 336 - 376
Target Start/End: Complemental strand, 19143065 - 19143025
Alignment:
Q  336 cttgtaacaattaaaatttcacatcaaattcaacccatcat 376  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  19143065 cttgtaacaattaaaatttcacatcaaattcaacacatcat 19143025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 337 - 377
Target Start/End: Original strand, 23625866 - 23625906
Alignment:
Q  337 ttgtaacaattaaaatttcacatcaaattcaacccatcata 377  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  23625866 ttgtaacaattaaaatttcacatcaaattcaatccatcata 23625906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 334 - 376
Target Start/End: Original strand, 43129544 - 43129586
Alignment:
Q  334 gacttgtaacaattaaaatttcacatcaaattcaacccatcat 376  Q
    |||||||||||||||||||||||||| ||||||||| ||||||    
T  43129544 gacttgtaacaattaaaatttcacattaaattcaactcatcat 43129586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 334 - 371
Target Start/End: Complemental strand, 23625999 - 23625962
Alignment:
Q  334 gacttgtaacaattaaaatttcacatcaaattcaaccc 371  Q
    |||||||||||||||||||||||||| |||||||||||    
T  23625999 gacttgtaacaattaaaatttcacattaaattcaaccc 23625962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 332 - 364
Target Start/End: Complemental strand, 26951161 - 26951129
Alignment:
Q  332 aggacttgtaacaattaaaatttcacatcaaat 364  Q
    |||||||||||||||||||||||||||||||||    
T  26951161 aggacttgtaacaattaaaatttcacatcaaat 26951129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 374 - 466
Target Start/End: Complemental strand, 31641265 - 31641182
Alignment:
Q  374 catatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttca 466  Q
    |||||||||||||||||||||||| |||||||| ||         |||||| |||||||| |||||||||||| || ||||||| ||||||||    
T  31641265 catatacgttcataaattttgttcaattccaaaccc---------tataacatgcaatttcttcttcattcttttttccatcttgattgttca 31641182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 376
Target Start/End: Complemental strand, 38364613 - 38364574
Alignment:
Q  337 ttgtaacaattaaaatttcacatcaaattcaacccatcat 376  Q
    |||||| |||||||||||||||||||||| ||||||||||    
T  38364613 ttgtaataattaaaatttcacatcaaattaaacccatcat 38364574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 336 - 364
Target Start/End: Complemental strand, 26920439 - 26920411
Alignment:
Q  336 cttgtaacaattaaaatttcacatcaaat 364  Q
    |||||||||||||||||||||||||||||    
T  26920439 cttgtaacaattaaaatttcacatcaaat 26920411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 336 - 376
Target Start/End: Original strand, 29725697 - 29725737
Alignment:
Q  336 cttgtaacaattaaaatttcacatcaaattcaacccatcat 376  Q
    ||||||| ||||||||||| |||||||||||||| ||||||    
T  29725697 cttgtaaaaattaaaattttacatcaaattcaactcatcat 29725737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 103; Significance: 5e-51; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 336 - 466
Target Start/End: Original strand, 1599614 - 1599744
Alignment:
Q  336 cttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttt 435  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |    
T  1599614 cttgtaacaattaaaatttcacatcaaattcaactcatcatatacgttcataaattttgttccattccaaaacctagaacacacataacgtgcaatttct 1599713  T
Q  436 tcttcattcttcttcccatcttaattgttca 466  Q
    ||||||||||||||  |||||| ||||||||    
T  1599714 tcttcattcttcttttcatcttgattgttca 1599744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 336 - 466
Target Start/End: Complemental strand, 38229648 - 38229518
Alignment:
Q  336 cttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttt 435  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| || | |||||||||||||| |    
T  38229648 cttgtaacaattaaaatttcacatcaaattcaacccatcatatatgttcataaattttgttccattgcaaaacctagaacatacataacgtgcaatttct 38229549  T
Q  436 tcttcattcttcttcccatcttaattgttca 466  Q
    |||||||||||||||||||||| ||||||||    
T  38229548 tcttcattcttcttcccatcttgattgttca 38229518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 336 - 457
Target Start/End: Complemental strand, 41408037 - 41407916
Alignment:
Q  336 cttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttt 435  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||||| ||||| ||||||||||||| |    
T  41408037 cttgtaacaattaaaatttcacatcaaattcaacccatcatatatgttcataaattttgttccattaaaaaacctagaacacatgtaacgtgcaatttct 41407938  T
Q  436 tcttcattcttcttcccatctt 457  Q
    ||||||||||||||||||||||    
T  41407937 tcttcattcttcttcccatctt 41407916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 336 - 457
Target Start/End: Complemental strand, 47254620 - 47254499
Alignment:
Q  336 cttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttt 435  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||| |    
T  47254620 cttgtaacaattaaaatttcacatcaaattcaacgcatcatatacgttcataaattttgttacattccaaaacctagaacacacataacgtgcaatttct 47254521  T
Q  436 tcttcattcttcttcccatctt 457  Q
    |||||||| |||||||||||||    
T  47254520 tcttcatttttcttcccatctt 47254499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 336 - 466
Target Start/End: Original strand, 43543194 - 43543324
Alignment:
Q  336 cttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttt 435  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||  |||| |||||||||||||| |    
T  43543194 cttgtaacaattaaaatttcacatcaaattcaactcatcatatacgttcataaattttgttcccttccaaaacctaggacacacataacgtgcaatttct 43543293  T
Q  436 tcttcattcttcttcccatcttaattgttca 466  Q
    ||||||||||||||| ||| || ||||||||    
T  43543294 tcttcattcttcttctcattttgattgttca 43543324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 334 - 466
Target Start/End: Complemental strand, 46160640 - 46160506
Alignment:
Q  334 gacttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaa---acctagaccacatataacgtgcaa 430  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||   ||  | | |||| |||| ||||||    
T  46160640 gacttgtaacaattaaaatttcacatcaaattcaacacatcatatacgttcataaattttgttccattccaaaattactaaaaacacacataatgtgcaa 46160541  T
Q  431 ttttttcttcattcttcttcccatcttaattgttca 466  Q
    ||| ||||||| ||||||| ||||||| ||||||||    
T  46160540 tttcttcttcactcttctt-ccatcttgattgttca 46160506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 377 - 464
Target Start/End: Complemental strand, 595398 - 595311
Alignment:
Q  377 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgtt 464  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||| ||||||    
T  595398 atacgttcataaattttgttccattccaaaacctagaacacacataacgtgcaatttcttcttcattcttcttcccatcttgattgtt 595311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 377 - 466
Target Start/End: Complemental strand, 1600566 - 1600477
Alignment:
Q  377 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttca 466  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||| |||||||||| ||||||||    
T  1600566 atacgttcataaattttgttccattccaaaacctagaacacacataacgtgcaatttcttcttcattcttattcccatcttgattgttca 1600477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 377 - 464
Target Start/End: Original strand, 38226274 - 38226361
Alignment:
Q  377 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgtt 464  Q
    ||||||||||||||||||||||||||||||||||||| |||  |||||||||||||| ||||||||||||||| ||||||| ||||||    
T  38226274 atacgttcataaattttgttccattccaaaacctagaacacgcataacgtgcaatttcttcttcattcttctttccatcttgattgtt 38226361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 377 - 454
Target Start/End: Original strand, 33980617 - 33980694
Alignment:
Q  377 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccat 454  Q
    ||||||||||||||||||||||||||||||||||||| | || |||||||||||||| ||||||||||||||||||||    
T  33980617 atacgttcataaattttgttccattccaaaacctagaactcacataacgtgcaatttcttcttcattcttcttcccat 33980694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 377 - 466
Target Start/End: Complemental strand, 33981524 - 33981435
Alignment:
Q  377 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttca 466  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||| ||||||||||||||| ||||||| ||| ||||    
T  33981524 atacgttcataaattttgttccattccaaaacctagaacacacataacgtgtaatttcttcttcattcttctttccatcttgattcttca 33981435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 374 - 454
Target Start/End: Complemental strand, 585127 - 585047
Alignment:
Q  374 catatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccat 454  Q
    |||||||||||||||||||||||||||||||||||||||| || | ||||| |||||||| ||||||||||||||||||||    
T  585127 catatacgttcataaattttgttccattccaaaacctagaacatacataacatgcaatttcttcttcattcttcttcccat 585047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 378 - 466
Target Start/End: Original strand, 46159693 - 46159781
Alignment:
Q  378 tacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttca 466  Q
    |||||||||||||||||||||||||| ||||||||| | || |||||||||||||| |||||||||||||||| |||||| ||||||||    
T  46159693 tacgttcataaattttgttccattcctaaacctagaacgcacataacgtgcaatttcttcttcattcttcttctcatcttgattgttca 46159781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 336 - 466
Target Start/End: Original strand, 19064124 - 19064248
Alignment:
Q  336 cttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttt 435  Q
    ||||||||||||||||||||||||||||||||||| ||||       ||||||||||  ||||||||||||||||| | || | ||||| |||| ||| |    
T  19064124 cttgtaacaattaaaatttcacatcaaattcaacctatcaa------tcataaatttgattccattccaaaacctaaaacagacataacctgcagtttct 19064217  T
Q  436 tcttcattcttcttcccatcttaattgttca 466  Q
    |||||||||||||||||||||| ||||||||    
T  19064218 tcttcattcttcttcccatcttgattgttca 19064248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 377 - 466
Target Start/End: Original strand, 42832035 - 42832124
Alignment:
Q  377 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttca 466  Q
    |||||||||||||||||||||||||| |||| ||||| |||| |||||||||||||| ||||||||| || | |||||||| ||||||||    
T  42832035 atacgttcataaattttgttccattctaaaatctagaacacacataacgtgcaatttcttcttcatttttttacccatcttgattgttca 42832124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 332 - 376
Target Start/End: Original strand, 38224540 - 38224584
Alignment:
Q  332 aggacttgtaacaattaaaatttcacatcaaattcaacccatcat 376  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  38224540 aggacttgtaacaattaaaatttcacatcaaattcaacccatcat 38224584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 377 - 433
Target Start/End: Complemental strand, 43544136 - 43544080
Alignment:
Q  377 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattt 433  Q
    ||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||    
T  43544136 atacgttcataaattttgttccattccaaaacctataacacacataacgtgcaattt 43544080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 377 - 440
Target Start/End: Original strand, 41407823 - 41407886
Alignment:
Q  377 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttc 440  Q
    ||||||||||| ||||||||||||||||||| ||||| |||| |||||||||||||| ||||||    
T  41407823 atacgttcatagattttgttccattccaaaatctagaacacacataacgtgcaatttcttcttc 41407886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 379 - 433
Target Start/End: Original strand, 47253692 - 47253746
Alignment:
Q  379 acgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattt 433  Q
    ||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||    
T  47253692 acgttcataaaatttgttccattccaaaacctagaacacacataacgtgcaattt 47253746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 336 - 376
Target Start/End: Complemental strand, 37708234 - 37708194
Alignment:
Q  336 cttgtaacaattaaaatttcacatcaaattcaacccatcat 376  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  37708234 cttgtaacaattaaaatttcacatcaaattcaacccatcat 37708194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 336 - 376
Target Start/End: Original strand, 41406144 - 41406184
Alignment:
Q  336 cttgtaacaattaaaatttcacatcaaattcaacccatcat 376  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  41406144 cttgtaacaattaaaatttcacatcaaattcaacccatcat 41406184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 336 - 379
Target Start/End: Complemental strand, 37624024 - 37623981
Alignment:
Q  336 cttgtaacaattaaaatttcacatcaaattcaacccatcatata 379  Q
    |||| |||||||||||||||||||||||||||||||||||||||    
T  37624024 cttgcaacaattaaaatttcacatcaaattcaacccatcatata 37623981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 332 - 369
Target Start/End: Complemental strand, 596253 - 596216
Alignment:
Q  332 aggacttgtaacaattaaaatttcacatcaaattcaac 369  Q
    ||||||||||||||||||||||||||||||||||||||    
T  596253 aggacttgtaacaattaaaatttcacatcaaattcaac 596216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 336 - 376
Target Start/End: Complemental strand, 1602269 - 1602229
Alignment:
Q  336 cttgtaacaattaaaatttcacatcaaattcaacccatcat 376  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  1602269 cttgtaacaattaaaattttacatcaaattcaacccatcat 1602229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 332 - 376
Target Start/End: Complemental strand, 33982462 - 33982418
Alignment:
Q  332 aggacttgtaacaattaaaatttcacatcaaattcaacccatcat 376  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||    
T  33982462 aggacttgtaacaattaacatttcacatcaaattcaacacatcat 33982418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 340 - 376
Target Start/End: Complemental strand, 43545035 - 43544999
Alignment:
Q  340 taacaattaaaatttcacatcaaattcaacccatcat 376  Q
    |||||||||||||||||||||||||||||||||||||    
T  43545035 taacaattaaaatttcacatcaaattcaacccatcat 43544999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 337 - 376
Target Start/End: Original strand, 42825812 - 42825851
Alignment:
Q  337 ttgtaacaattaaaatttcacatcaaattcaacccatcat 376  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  42825812 ttgtaacaattaaaatttcacatcaaattccacccatcat 42825851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 415 - 466
Target Start/End: Complemental strand, 42832913 - 42832862
Alignment:
Q  415 cacatataacgtgcaattttttcttcattcttcttcccatcttaattgttca 466  Q
    |||| |||||||||||||| |||||||||||||| |||||||| ||||||||    
T  42832913 cacacataacgtgcaatttcttcttcattcttctccccatcttgattgttca 42832862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 337 - 376
Target Start/End: Original strand, 47252174 - 47252213
Alignment:
Q  337 ttgtaacaattaaaatttcacatcaaattcaacccatcat 376  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  47252174 ttgtaacaattaaaatttcacatcaaattctacccatcat 47252213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 336 - 376
Target Start/End: Complemental strand, 42833867 - 42833827
Alignment:
Q  336 cttgtaacaattaaaatttcacatcaaattcaacccatcat 376  Q
    |||| ||||||||||||||||||||||||| ||||||||||    
T  42833867 cttgaaacaattaaaatttcacatcaaatttaacccatcat 42833827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 370
Target Start/End: Complemental strand, 586028 - 585997
Alignment:
Q  339 gtaacaattaaaatttcacatcaaattcaacc 370  Q
    ||||||||||||||||||||||||||||||||    
T  586028 gtaacaattaaaatttcacatcaaattcaacc 585997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 369
Target Start/End: Original strand, 33979571 - 33979605
Alignment:
Q  335 acttgtaacaattaaaatttcacatcaaattcaac 369  Q
    ||||| |||||||||||||||||||||||||||||    
T  33979571 acttgcaacaattaaaatttcacatcaaattcaac 33979605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 103; Significance: 5e-51; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 336 - 466
Target Start/End: Complemental strand, 8525666 - 8525536
Alignment:
Q  336 cttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttt 435  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||| |    
T  8525666 cttgtaacaattaaaatttcacatcaaattcaactcatcatatacgttcataaattttgttccattccaaaacctagagtacacataacgtgcaatttct 8525567  T
Q  436 tcttcattcttcttcccatcttaattgttca 466  Q
    ||||||||||||||| |||||| ||||||||    
T  8525566 tcttcattcttcttctcatcttgattgttca 8525536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 336 - 466
Target Start/End: Original strand, 34858476 - 34858606
Alignment:
Q  336 cttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttt 435  Q
    ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||||||||||| |||| |||||||||||||| |    
T  34858476 cttgtaacaattaaaatttcacatcaaattccacccatcataaacgttcataaattttgtttcattccaaaacctagaacacacataacgtgcaatttct 34858575  T
Q  436 tcttcattcttcttcccatcttaattgttca 466  Q
    |||||||||||||||||||||| ||||||||    
T  34858576 tcttcattcttcttcccatcttgattgttca 34858606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 336 - 466
Target Start/End: Original strand, 5100435 - 5100565
Alignment:
Q  336 cttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttt 435  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||| |||| ||||||||| |    
T  5100435 cttgtaacaattaaaatttcacatcaaattcaacgcatcatatacgttcataaattttgttacattccaaaacctagaacacacataatgtgcaatttct 5100534  T
Q  436 tcttcattcttcttcccatcttaattgttca 466  Q
    |||||||| ||||||||||||| ||||||||    
T  5100535 tcttcatttttcttcccatcttgattgttca 5100565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 336 - 466
Target Start/End: Original strand, 29639530 - 29639660
Alignment:
Q  336 cttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttt 435  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||| ||||||||||||| |    
T  29639530 cttgtaacaattaaagtttcacatcaaattcaacccatcatatacattcataaattttgttccactccaaaacctagaacacatgtaacgtgcaatttct 29639629  T
Q  436 tcttcattcttcttcccatcttaattgttca 466  Q
    |||||||||||||||||||| | ||||||||    
T  29639630 tcttcattcttcttcccatcatgattgttca 29639660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 336 - 466
Target Start/End: Original strand, 37250376 - 37250506
Alignment:
Q  336 cttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttt 435  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||      
T  37250376 cttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctagaacacgcataacgtgcaatttcc 37250475  T
Q  436 tcttcattcttcttcccatcttaattgttca 466  Q
    |||||||| |||||||||| || ||||||||    
T  37250476 tcttcatttttcttcccattttgattgttca 37250506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 337 - 466
Target Start/End: Complemental strand, 29640326 - 29640198
Alignment:
Q  337 ttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaatttttt 436  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||    
T  29640326 ttgtaacaattaaaatttcacatcaaattcaacccatcatatatgttcataaattttgttccattccaaaacctagaacacacataacgtgcaatttctt 29640227  T
Q  437 cttcattcttcttcccatcttaattgttca 466  Q
    |||| || ||||||||||||| ||||||||    
T  29640226 cttc-ttattcttcccatcttgattgttca 29640198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 377 - 466
Target Start/End: Original strand, 15525199 - 15525288
Alignment:
Q  377 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttca 466  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||| ||||||||    
T  15525199 atacgttcataaattttgttccattccaaaacctagaacacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 15525288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 336 - 440
Target Start/End: Complemental strand, 3035783 - 3035679
Alignment:
Q  336 cttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttt 435  Q
    ||||||| || ||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||| | ||||||||| ||||||||| |    
T  3035783 cttgtaataactaaaatttcacatcaaattcaacacatcatatatgttcatacattttgttccattccaaaacctataacacatataatgtgcaatttct 3035684  T
Q  436 tcttc 440  Q
    |||||    
T  3035683 tcttc 3035679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 377 - 466
Target Start/End: Original strand, 3034866 - 3034955
Alignment:
Q  377 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttca 466  Q
    ||||||||||||||||| ||||||||||||||||| | |||| |||||||||||||| ||||||||||||||||||||||| ||||||||    
T  3034866 atacgttcataaattttattccattccaaaacctaaaacacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 3034955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 377 - 466
Target Start/End: Complemental strand, 5101319 - 5101230
Alignment:
Q  377 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttca 466  Q
    ||||||||||||| ||||||||||||||||| ||||| |||| |||| ||||||||| ||||||||||||||||||||||| ||||||||    
T  5101319 atacgttcataaaatttgttccattccaaaatctagaacacacataatgtgcaatttcttcttcattcttcttcccatcttgattgttca 5101230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 377 - 466
Target Start/End: Complemental strand, 15526111 - 15526024
Alignment:
Q  377 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttca 466  Q
    |||||||||||||||||||||||||||||||||||||  ||||| |||||||||||| |||||||||||||||  |||||| ||||||||    
T  15526111 atacgttcataaattttgttccattccaaaacctaga--acatacaacgtgcaatttcttcttcattcttcttttcatcttgattgttca 15526024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 336 - 450
Target Start/End: Complemental strand, 29390837 - 29390729
Alignment:
Q  336 cttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttt 435  Q
    ||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||| |||| |||||||| || | ||||| || | ||| |    
T  29390837 cttgtaacaattaaaatttcacatcaaattcaacccat------ggttcataaattttgttccagtccataacctagaacagacataacctgtagtttct 29390744  T
Q  436 tcttcattcttcttc 450  Q
    |||||||||||||||    
T  29390743 tcttcattcttcttc 29390729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 377 - 466
Target Start/End: Original strand, 8524723 - 8524812
Alignment:
Q  377 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttca 466  Q
    |||||||||||||||||||| |||||||||||||| | |||  ||||| |||||||| |||||||||||||||| |||||| | ||||||    
T  8524723 atacgttcataaattttgtttcattccaaaacctataacacgcataacttgcaatttcttcttcattcttcttctcatcttgactgttca 8524812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 376 - 440
Target Start/End: Complemental strand, 34859440 - 34859376
Alignment:
Q  376 tatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttc 440  Q
    |||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||| ||||||    
T  34859440 tatacgttcataaattttgttctattccaaaacctagaacacatgtaacgtgcaatttcttcttc 34859376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 336 - 376
Target Start/End: Original strand, 8520453 - 8520493
Alignment:
Q  336 cttgtaacaattaaaatttcacatcaaattcaacccatcat 376  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  8520453 cttgtaacaattaaaattttacatcaaattcaacccatcat 8520493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 342 - 379
Target Start/End: Original strand, 6719689 - 6719726
Alignment:
Q  342 acaattaaaatttcacatcaaattcaacccatcatata 379  Q
    |||||||||||||||||||||||| |||||||||||||    
T  6719689 acaattaaaatttcacatcaaatttaacccatcatata 6719726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 337 - 374
Target Start/End: Original strand, 29389182 - 29389219
Alignment:
Q  337 ttgtaacaattaaaatttcacatcaaattcaacccatc 374  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  29389182 ttgtaacaattaaaatttcacatcaaattcaactcatc 29389219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 420 - 464
Target Start/End: Complemental strand, 37251272 - 37251228
Alignment:
Q  420 ataacgtgcaattttttcttcattcttcttcccatcttaattgtt 464  Q
    ||||||||||| || ||||||||||||||||||||||| ||||||    
T  37251272 ataacgtgcaacttattcttcattcttcttcccatcttgattgtt 37251228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 424
Target Start/End: Complemental strand, 37252582 - 37252535
Alignment:
Q  377 atacgttcataaattttgttccattccaaaacctagaccacatataac 424  Q
    ||||||||||||||||||||| ||| ||||||||||| |||| |||||    
T  37252582 atacgttcataaattttgttcaatttcaaaacctagaacacacataac 37252535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 340 - 376
Target Start/End: Original strand, 15524322 - 15524358
Alignment:
Q  340 taacaattaaaatttcacatcaaattcaacccatcat 376  Q
    |||||||||||||||||||| |||||||| |||||||    
T  15524322 taacaattaaaatttcacattaaattcaaaccatcat 15524358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 336 - 376
Target Start/End: Complemental strand, 37256252 - 37256212
Alignment:
Q  336 cttgtaacaattaaaatttcacatcaaattcaacccatcat 376  Q
    ||||||||||||||||||| |||||||| ||||| ||||||    
T  37256252 cttgtaacaattaaaatttgacatcaaactcaactcatcat 37256212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 103; Significance: 5e-51; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 336 - 466
Target Start/End: Complemental strand, 48073813 - 48073683
Alignment:
Q  336 cttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttt 435  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||| ||||||||| |    
T  48073813 cttgtaaaaattaaaatttcacatcaaattcaacccatcatatacgttcatatattttgttccattccaaaacctagaacacacataatgtgcaatttct 48073714  T
Q  436 tcttcattcttcttcccatcttaattgttca 466  Q
    |||||||||||||||||||||| ||||||||    
T  48073713 tcttcattcttcttcccatcttgattgttca 48073683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 336 - 466
Target Start/End: Complemental strand, 42879593 - 42879463
Alignment:
Q  336 cttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttt 435  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||| |    
T  42879593 cttgtaacaattaaaatttcacatcaaattcaactcatcatatacgttcataaattttgttccattccaaaacctaaaacacacataacgtgcaatttct 42879494  T
Q  436 tcttcattcttcttcccatcttaattgttca 466  Q
    |||||||||||||||  ||||| ||||||||    
T  42879493 tcttcattcttcttcttatcttgattgttca 42879463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 11 - 109
Target Start/End: Original strand, 34914810 - 34914908
Alignment:
Q  11 tagctgttgccccctcatgataaagttagagacgaagtaccgatatatataaattcttatttatactgtctcagtttgtatgacatactcaactcaaaa 109  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34914810 tagctgttgccccctcatgataaagttggagacgaagtactgatatatataaattcttatttatactgtctcagtttgtatgacatactcaactcaaaa 34914908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 336 - 466
Target Start/End: Complemental strand, 39131830 - 39131700
Alignment:
Q  336 cttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttt 435  Q
    |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||| |||| ||||| |||||||| |    
T  39131830 cttgtaacaattaaaatttcacatcaaattcaactcattatatacgttcataaattttgttccattccaaaatctagaacacacataacatgcaatttct 39131731  T
Q  436 tcttcattcttcttcccatcttaattgttca 466  Q
    |||||||| |||||| |||||| ||||||||    
T  39131730 tcttcattattcttctcatcttgattgttca 39131700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 336 - 466
Target Start/End: Original strand, 42164161 - 42164291
Alignment:
Q  336 cttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttt 435  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||   ||||||||||||||      
T  42164161 cttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgtttcattccaaaacctagaacatgcataacgtgcaatttcc 42164260  T
Q  436 tcttcattcttcttcccatcttaattgttca 466  Q
    |||||||| |||||| |||||| ||||||||    
T  42164261 tcttcatttttcttctcatcttgattgttca 42164291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 336 - 466
Target Start/End: Complemental strand, 43862469 - 43862339
Alignment:
Q  336 cttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttt 435  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||   ||||||||||||||      
T  43862469 cttgtaacaattaaaatttcacatcaaattcaacccatcatatactttcataaattttgttccattccaaaacctagaacatgcataacgtgcaatttcc 43862370  T
Q  436 tcttcattcttcttcccatcttaattgttca 466  Q
    |||||||| ||||||| ||||| ||||||||    
T  43862369 tcttcatttttcttcctatcttgattgttca 43862339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 377 - 466
Target Start/End: Original strand, 43861547 - 43861636
Alignment:
Q  377 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttca 466  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||| ||||||||||||||||||||||| ||||||||    
T  43861547 atacgttcataaattttgttccattccaaaacctagaacacacataacgtgaaatttcttcttcattcttcttcccatcttgattgttca 43861636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 377 - 466
Target Start/End: Complemental strand, 50937506 - 50937417
Alignment:
Q  377 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttca 466  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||| |||||| ||||||||    
T  50937506 atacgttcataaattttgttccattccaaaacctagaacacacataacgtgcaatttcttcttcattcttcttctcatcttgattgttca 50937417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 379 - 466
Target Start/End: Original strand, 39130891 - 39130978
Alignment:
Q  379 acgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttca 466  Q
    |||||||||||||||||||||||||||| |||||| |||| |||||||||||||| ||||||||||||||||||||||| ||||||||    
T  39130891 acgttcataaattttgttccattccaaatcctagaacacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 39130978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 336 - 466
Target Start/End: Original strand, 36465829 - 36465962
Alignment:
Q  336 cttgtaacaattaaaatttcacatcaaattcaacccatcat----atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaat 431  Q
    |||| |||| || ||||||||||||||||||| ||||||||    |||||||||||||||||||||||||| |||||||||| |||| ||||| ||||||    
T  36465829 cttgaaacacttgaaatttcacatcaaattcatcccatcattcatatacgttcataaattttgttccattcaaaaacctagaacacacataacctgcaat 36465928  T
Q  432 tttttcttcattcttcttcccatcttaattgttca 466  Q
    || ||||||| |||||||||||| || ||||||||    
T  36465929 ttcttcttca-tcttcttcccatgttgattgttca 36465962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 377 - 466
Target Start/End: Original strand, 42878649 - 42878738
Alignment:
Q  377 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttca 466  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||| ||||| ||||||||||||||||| ||||||||    
T  42878649 atacgttcataaattttgttccattccaaaacctagaacacacataaagtgcaatttcttcttgattcttcttcccatcttgattgttca 42878738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 377 - 466
Target Start/End: Original strand, 22978865 - 22978954
Alignment:
Q  377 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttca 466  Q
    |||||||||||||||||||||||||  |||||||||| || |||||||||||||||| |||||||||||||||| |||||| ||||||||    
T  22978865 atacgttcataaattttgttccatttaaaaacctagaacatatataacgtgcaatttcttcttcattcttcttctcatcttgattgttca 22978954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 374 - 466
Target Start/End: Complemental strand, 43358581 - 43358488
Alignment:
Q  374 catatacgttcataaattttgttccatt-ccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttca 466  Q
    |||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||| | |||||||||| |||||||||| ||||||||    
T  43358581 catatacgttcataaattttgttccatttccaaaacctagaacacacataacgtgcaatttctacttcattctttttcccatcttgattgttca 43358488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 377 - 466
Target Start/End: Complemental strand, 2228473 - 2228384
Alignment:
Q  377 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttca 466  Q
    |||||||||||||||||||| ||||||||||| |||| |||| |||||||||||||| || ||||||||| |||||||||| ||||||||    
T  2228473 atacgttcataaattttgtttcattccaaaacttagaacacacataacgtgcaatttctttttcattctttttcccatcttgattgttca 2228384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 377 - 466
Target Start/End: Complemental strand, 22979773 - 22979684
Alignment:
Q  377 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttca 466  Q
    ||||||||||||||||||||||||||||||| ||||| |||| |||||||| ||||| ||||||||| ||||| ||||||| ||||||||    
T  22979773 atacgttcataaattttgttccattccaaaaactagaacacacataacgtgaaatttcttcttcattattcttgccatcttgattgttca 22979684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 377 - 466
Target Start/End: Original strand, 50936601 - 50936690
Alignment:
Q  377 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttca 466  Q
    ||||||||||||||||||||||||||||||||||||| |||| | |||||| ||||| |||||||||||| ||| |||||| ||||||||    
T  50936601 atacgttcataaattttgttccattccaaaacctagaacacacacaacgtgaaatttcttcttcattctttttctcatcttgattgttca 50936690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 374 - 466
Target Start/End: Original strand, 48072877 - 48072969
Alignment:
Q  374 catatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttca 466  Q
    |||| ||||||||||||||||||| |||||||| |||||| |||| |||||||||||||| |||||||||||| || ||||||| ||||||||    
T  48072877 catacacgttcataaattttgttcaattccaaaccctagaacacacataacgtgcaatttcttcttcattcttttttccatcttgattgttca 48072969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 386 - 466
Target Start/End: Complemental strand, 42165097 - 42165017
Alignment:
Q  386 taaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttca 466  Q
    |||||||| || |||||||||||||||| |||| |||||||||||||| |||||||||||||||||| |||| ||||||||    
T  42165097 taaattttatttcattccaaaacctagaacacacataacgtgcaatttcttcttcattcttcttcccttcttgattgttca 42165017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 377 - 466
Target Start/End: Original strand, 7042568 - 7042654
Alignment:
Q  377 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttca 466  Q
    |||||||||||||||||||||||||| |||||| ||| |    |||||||||||||| ||||||||||||||||||||||| ||||||||    
T  7042568 atacgttcataaattttgttccattctaaaacccagaac---cataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 7042654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 336 - 466
Target Start/End: Complemental strand, 36471683 - 36471561
Alignment:
Q  336 cttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttt 435  Q
    |||||||||||||||||||||||||||||| |||  || ||  ||||||||||||||||||||||||||||||||||| || | | |     |||||| |    
T  36471683 cttgtaacaattaaaatttcacatcaaatttaac--at-atgcacgttcataaattttgttccattccaaaacctagaacagacaca-----caatttct 36471592  T
Q  436 tcttcattcttcttcccatcttaattgttca 466  Q
    |||| ||||||||||||||||| ||||||||    
T  36471591 tcttaattcttcttcccatcttgattgttca 36471561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 336 - 376
Target Start/End: Complemental strand, 41889564 - 41889524
Alignment:
Q  336 cttgtaacaattaaaatttcacatcaaattcaacccatcat 376  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  41889564 cttgtaacaattaaaatttcacatcaaattcaacccatcat 41889524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 336 - 376
Target Start/End: Complemental strand, 42167475 - 42167435
Alignment:
Q  336 cttgtaacaattaaaatttcacatcaaattcaacccatcat 376  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  42167475 cttgtaacaattaaaatttcacatcaaattcaacccatcat 42167435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 336 - 376
Target Start/End: Original strand, 42877196 - 42877236
Alignment:
Q  336 cttgtaacaattaaaatttcacatcaaattcaacccatcat 376  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  42877196 cttgtaacaattaaaatttcacatcaaattcaacccatcat 42877236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 336 - 376
Target Start/End: Complemental strand, 50938380 - 50938340
Alignment:
Q  336 cttgtaacaattaaaatttcacatcaaattcaacccatcat 376  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  50938380 cttgtaacaattaaaatttcacatcaaattcaacccatcat 50938340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 334 - 377
Target Start/End: Original strand, 22978032 - 22978075
Alignment:
Q  334 gacttgtaacaattaaaatttcacatcaaattcaacccatcata 377  Q
    ||||||||||||||||||||||||||||||||||||||| ||||    
T  22978032 gacttgtaacaattaaaatttcacatcaaattcaacccagcata 22978075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 336 - 379
Target Start/End: Complemental strand, 32001088 - 32001045
Alignment:
Q  336 cttgtaacaattaaaatttcacatcaaattcaacccatcatata 379  Q
    |||| |||||||||||||||||||||||||||||||||||||||    
T  32001088 cttgcaacaattaaaatttcacatcaaattcaacccatcatata 32001045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 336 - 379
Target Start/End: Complemental strand, 55136492 - 55136449
Alignment:
Q  336 cttgtaacaattaaaatttcacatcaaattcaacccatcatata 379  Q
    |||| |||||||||||||||||||||||||||||||||||||||    
T  55136492 cttgcaacaattaaaatttcacatcaaattcaacccatcatata 55136449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 336 - 376
Target Start/End: Complemental strand, 2229313 - 2229273
Alignment:
Q  336 cttgtaacaattaaaatttcacatcaaattcaacccatcat 376  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  2229313 cttgtaacaattaaaatttcacatcaaattcaactcatcat 2229273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 336 - 376
Target Start/End: Complemental strand, 43359425 - 43359385
Alignment:
Q  336 cttgtaacaattaaaatttcacatcaaattcaacccatcat 376  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  43359425 cttgtaacaattaaaatttcacaccaaattcaacccatcat 43359385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 336 - 376
Target Start/End: Original strand, 43860682 - 43860722
Alignment:
Q  336 cttgtaacaattaaaatttcacatcaaattcaacccatcat 376  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  43860682 cttgtaataattaaaatttcacatcaaattcaacccatcat 43860722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 336 - 376
Target Start/End: Original strand, 48071932 - 48071972
Alignment:
Q  336 cttgtaacaattaaaatttcacatcaaattcaacccatcat 376  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  48071932 cttgtaacagttaaaatttcacatcaaattcaacccatcat 48071972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 336 - 374
Target Start/End: Original strand, 41888765 - 41888803
Alignment:
Q  336 cttgtaacaattaaaatttcacatcaaattcaacccatc 374  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  41888765 cttgtaacaattaaaatttcacatcaaattcaactcatc 41888803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 336 - 376
Target Start/End: Original strand, 39129256 - 39129296
Alignment:
Q  336 cttgtaacaattaaaatttcacatcaaattcaacccatcat 376  Q
    |||||||||||||||||||  ||||||||||||||||||||    
T  39129256 cttgtaacaattaaaattttgcatcaaattcaacccatcat 39129296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 377
Target Start/End: Original strand, 7041694 - 7041727
Alignment:
Q  344 aattaaaatttcacatcaaattcaacccatcata 377  Q
    |||||||||||||||||||||||||| |||||||    
T  7041694 aattaaaatttcacatcaaattcaactcatcata 7041727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 88; Significance: 4e-42; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 336 - 466
Target Start/End: Complemental strand, 23260914 - 23260786
Alignment:
Q  336 cttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttt 435  Q
    |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||  | |||| |||||||| ||||| |    
T  23260914 cttgtaacaattaaaatttcacatcaaattcaacgcatcatatatgttcataaattttgttccattccaaaacct--aacacacataacgtgtaatttct 23260817  T
Q  436 tcttcattcttcttcccatcttaattgttca 466  Q
    |||||| ||||||||||||||| ||||||||    
T  23260816 tcttcactcttcttcccatcttgattgttca 23260786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 374 - 466
Target Start/End: Original strand, 23260104 - 23260196
Alignment:
Q  374 catatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttca 466  Q
    |||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||| ||||||||||||||| ||||||| ||| ||||    
T  23260104 catatacgttcataaattttgttccattccaaaacctagaacacacataacatgcaatttcttcttcattcttctttccatcttgatttttca 23260196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 383 - 466
Target Start/End: Original strand, 4639228 - 4639311
Alignment:
Q  383 tcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttca 466  Q
    ||||||||||| |||||||| |||||||||| |||| ||||| | |||||| ||||||||||||||||||||||| ||||||||    
T  4639228 tcataaattttcttccattctaaaacctagaacacacataacatacaatttcttcttcattcttcttcccatcttgattgttca 4639311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 336 - 376
Target Start/End: Complemental strand, 4640236 - 4640196
Alignment:
Q  336 cttgtaacaattaaaatttcacatcaaattcaacccatcat 376  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  4640236 cttgtaacaattaaaatttcacatcaaattcaacccatcat 4640196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 336 - 376
Target Start/End: Complemental strand, 43847572 - 43847532
Alignment:
Q  336 cttgtaacaattaaaatttcacatcaaattcaacccatcat 376  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  43847572 cttgtaacaattaaaatttcacatcaaattcaacccatcat 43847532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 336 - 376
Target Start/End: Complemental strand, 44110075 - 44110035
Alignment:
Q  336 cttgtaacaattaaaatttcacatcaaattcaacccatcat 376  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  44110075 cttgtaacaattaaaatttcacatcaaattcaacccatcat 44110035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 332 - 376
Target Start/End: Original strand, 44299270 - 44299314
Alignment:
Q  332 aggacttgtaacaattaaaatttcacatcaaattcaacccatcat 376  Q
    |||||||||||||||||||||||||||||||||| || |||||||    
T  44299270 aggacttgtaacaattaaaatttcacatcaaatttaatccatcat 44299314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 336 - 376
Target Start/End: Complemental strand, 44300087 - 44300047
Alignment:
Q  336 cttgtaacaattaaaatttcacatcaaattcaacccatcat 376  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  44300087 cttgtaacaattaaaatttcacatcaaattcaactcatcat 44300047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 337 - 376
Target Start/End: Complemental strand, 11757014 - 11756975
Alignment:
Q  337 ttgtaacaattaaaatttcacatcaaattcaacccatcat 376  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  11757014 ttgtaacaattaaaatttcacatcacattcaacccatcat 11756975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 334 - 376
Target Start/End: Original strand, 23259039 - 23259081
Alignment:
Q  334 gacttgtaacaattaaaatttcacatcaaattcaacccatcat 376  Q
    ||||||||||||||||||||| ||||| |||||||||||||||    
T  23259039 gacttgtaacaattaaaattttacatcgaattcaacccatcat 23259081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 341 - 377
Target Start/End: Original strand, 4638354 - 4638390
Alignment:
Q  341 aacaattaaaatttcacatcaaattcaacccatcata 377  Q
    ||||||||||||||||||||||||||||| |||||||    
T  4638354 aacaattaaaatttcacatcaaattcaactcatcata 4638390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 368
Target Start/End: Original strand, 42159569 - 42159600
Alignment:
Q  337 ttgtaacaattaaaatttcacatcaaattcaa 368  Q
    ||||||||||||||||||||||||||||||||    
T  42159569 ttgtaacaattaaaatttcacatcaaattcaa 42159600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0217 (Bit Score: 78; Significance: 4e-36; HSPs: 3)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 336 - 413
Target Start/End: Complemental strand, 931 - 854
Alignment:
Q  336 cttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctaga 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  931 cttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctaga 854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0217; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 377 - 466
Target Start/End: Complemental strand, 20408 - 20319
Alignment:
Q  377 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttca 466  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||| ||||||||    
T  20408 atacgttcataaattttgttccattccaaaacctagaacacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 20319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0217; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 420 - 466
Target Start/End: Original strand, 19541 - 19587
Alignment:
Q  420 ataacgtgcaattttttcttcattcttcttcccatcttaattgttca 466  Q
    ||||||||||||||  |||||||| ||||||||||||| ||||||||    
T  19541 ataacgtgcaatttcctcttcatttttcttcccatcttgattgttca 19587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 4e-36; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 340 - 449
Target Start/End: Complemental strand, 13869105 - 13868996
Alignment:
Q  340 taacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttctt 439  Q
    ||||||| |||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||| |||| ||||| |||||||| |||||    
T  13869105 taacaataaaaatttcacatcaaattcaactcaccatatacgctcataaattttgttccattccaaaacctagaacacacataacatgcaatttcttctt 13869006  T
Q  440 cattcttctt 449  Q
    ||||||||||    
T  13869005 cattcttctt 13868996  T

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Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 377 - 466
Target Start/End: Original strand, 13868184 - 13868273
Alignment:
Q  377 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttca 466  Q
    ||||||||||||||||||||||||||||||||||| | |||| |||||||||||||| ||||||||||||||||||||||| ||||||||    
T  13868184 atacgttcataaattttgttccattccaaaacctaaaacacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 13868273  T

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Target: chr6; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 374 - 467
Target Start/End: Original strand, 24160173 - 24160266
Alignment:
Q  374 catatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttcat 467  Q
    ||||||||||||||||||||||||| |||||||| ||||| |||| |||||||| ||||| |||||||||||||||| |||||| |||||||||    
T  24160173 catatacgttcataaattttgttcccttccaaaatctagaacacacataacgtgaaatttattcttcattcttcttctcatcttgattgttcat 24160266  T

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Target: chr6; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 377 - 466
Target Start/End: Original strand, 15509070 - 15509159
Alignment:
Q  377 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttca 466  Q
    ||||||| ||||||||||||||||||||||||||||| |||| || || | |||||| ||||||  ||||||||| ||||| ||||||||    
T  15509070 atacgttaataaattttgttccattccaaaacctagaacacacatgacattcaatttcttcttcggtcttcttcctatcttgattgttca 15509159  T

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Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 336 - 376
Target Start/End: Complemental strand, 5090227 - 5090187
Alignment:
Q  336 cttgtaacaattaaaatttcacatcaaattcaacccatcat 376  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  5090227 cttgtaacaattaaaatttcacatcaaattcaacccatcat 5090187  T

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Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 415 - 466
Target Start/End: Original strand, 12503661 - 12503712
Alignment:
Q  415 cacatataacgtgcaattttttcttcattcttcttcccatcttaattgttca 466  Q
    |||| |||||||||||||| ||||||||||||||||||||||| ||||||||    
T  12503661 cacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 12503712  T

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Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 377 - 466
Target Start/End: Complemental strand, 32561652 - 32561570
Alignment:
Q  377 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttca 466  Q
    |||||||||||||||||||  |||||||||||||| |       ||||||||||||| ||||||||||||||||| ||||| ||||||||    
T  32561652 atacgttcataaattttgtgtcattccaaaacctaaa-------taacgtgcaatttcttcttcattcttcttccgatcttgattgttca 32561570  T

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Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 336 - 376
Target Start/End: Complemental strand, 34574738 - 34574698
Alignment:
Q  336 cttgtaacaattaaaatttcacatcaaattcaacccatcat 376  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  34574738 cttgtaaaaattaaaatttcacatcaaattcaacccatcat 34574698  T

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Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 336 - 375
Target Start/End: Original strand, 15508305 - 15508344
Alignment:
Q  336 cttgtaacaattaaaatttcacatcaaattcaacccatca 375  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  15508305 cttgtaacaattaaaatttcacattaaattcaacccatca 15508344  T

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Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 377 - 440
Target Start/End: Original strand, 32560768 - 32560831
Alignment:
Q  377 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttc 440  Q
    |||| ||||||| |||||||||||||||||||||||| |||| ||||| | |||||| ||||||    
T  32560768 atacattcataatttttgttccattccaaaacctagagcacacataacatacaatttcttcttc 32560831  T

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Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 336 - 376
Target Start/End: Original strand, 13866220 - 13866260
Alignment:
Q  336 cttgtaacaattaaaatttcacatcaaattcaacccatcat 376  Q
    ||||||||||||||||||| |||||||| ||||||||||||    
T  13866220 cttgtaacaattaaaattttacatcaaactcaacccatcat 13866260  T

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Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 336 - 376
Target Start/End: Original strand, 24159194 - 24159234
Alignment:
Q  336 cttgtaacaattaaaatttcacatcaaattcaacccatcat 376  Q
    ||||||||||||||||||| |||||||||||||| ||||||    
T  24159194 cttgtaacaattaaaattttacatcaaattcaactcatcat 24159234  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 340 - 376
Target Start/End: Complemental strand, 32562550 - 32562514
Alignment:
Q  340 taacaattaaaatttcacatcaaattcaacccatcat 376  Q
    ||||||||||||||| ||||||||||||| |||||||    
T  32562550 taacaattaaaatttgacatcaaattcaatccatcat 32562514  T

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Target: scaffold0009 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 336 - 376
Target Start/End: Complemental strand, 94547 - 94507
Alignment:
Q  336 cttgtaacaattaaaatttcacatcaaattcaacccatcat 376  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  94547 cttgtaacaattaaaatttcacatcaaattcaacccatcat 94507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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