View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0622_low_43 (Length: 465)
Name: NF0622_low_43
Description: NF0622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0622_low_43 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 123 - 465
Target Start/End: Original strand, 16470045 - 16470387
Alignment:
| Q |
123 |
gtacatttggtatagtttttcctaatcaattaactaatttaatatttaatgagcatgcaccgttagtgtaaaacaacatctagctagtaagagacatcca |
222 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
16470045 |
gtacatttggtatagtttttcctaattaattaactaatttaatatttaatgagcatgcaccgttagtgtaaaacaacatctagctagtgagagacatcca |
16470144 |
T |
|
| Q |
223 |
tttttccatgtcacattattattttcaaaacaatcatacaaaaatggactgatatggcaaagtatttgtctctcattggatgtattttacagtatataat |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16470145 |
tttttccatgtcacattattattttcaaaacaatcatacaaaaatggactgatatggcaaagtatttgtctctcattggatgtattttacagtatataat |
16470244 |
T |
|
| Q |
323 |
ttaattccttaatttaaaatgagagtacataaaataccttgaggccttaaacctcgcataagaaacttcaaccaattcaaactttatgtactgggataac |
422 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16470245 |
ttaattccttaatttaaaatgagagtacataaaataccttgaggccttaaacctcgcataagaaacttcaaccaattcaaactttatgtactgggataac |
16470344 |
T |
|
| Q |
423 |
cctatttgaataaacatcttcaaccttaaaagagaaaatgata |
465 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16470345 |
cctatttgaataaacatcttcaaccttaaaagagaaaatgata |
16470387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 41
Target Start/End: Original strand, 16469930 - 16469963
Alignment:
| Q |
8 |
ccaacaaaatcctcagtattgaagtttttaagca |
41 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |
|
|
| T |
16469930 |
ccaacaaaatcctcagtatttaagtttttaagca |
16469963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3026 times since January 2019
Visitors: 3831