View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0622_low_46 (Length: 464)
Name: NF0622_low_46
Description: NF0622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0622_low_46 |
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Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 98 - 378
Target Start/End: Complemental strand, 38259879 - 38259599
Alignment:
| Q |
98 |
ggtttcacattcagcaccatgacactaaatcttcttctcctaatagcaatggtagcaaccaacattctctccctctaccatctctccacaactctccaat |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38259879 |
ggtttcacattcagcaccatgacactaaatcttcttctcctaatagcaatggtagcaaccaacattctctccctctaccatctctccacaactctccaat |
38259780 |
T |
|
| Q |
198 |
cccctaaatccccaaaaccacttccaccgatccccgatgaactcctccgtcaacttcacaccatacgcgccaccatcaaccacctcacgcgcctccagaa |
297 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38259779 |
cccctaaatccccaaaaccacttccaccgatacccgatgaactcctccgtcaacttcacaccatacgcgccaccatcaaccacctcacgcgcctccagaa |
38259680 |
T |
|
| Q |
298 |
caccaaccccaacaccaacacaaaatcatcaatcccttcagatctactcctctactcacacatctcaccaattgcttcttc |
378 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38259679 |
caccaaccccaacaccaacacaaaatcatcaatcccttcagatctactcctctactcacacatctcaccaattgcttcttc |
38259599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 306 - 350
Target Start/End: Complemental strand, 12107515 - 12107471
Alignment:
| Q |
306 |
ccaacaccaacacaaaatcatcaatcccttcagatctactcctct |
350 |
Q |
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|||||||||||||||| || |||||||||||||||||| |||||| |
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| T |
12107515 |
ccaacaccaacacaaattcctcaatcccttcagatctattcctct |
12107471 |
T |
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