View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0622_low_47 (Length: 461)
Name: NF0622_low_47
Description: NF0622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0622_low_47 |
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Alignment Details
Target: chr2 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 134 - 453
Target Start/End: Complemental strand, 17468185 - 17467860
Alignment:
| Q |
134 |
caaacaaaccaaatatatataatggaataataaagttagaacaacatatagtagcatcttaaatccctaattggatacgccataaacaaattcaaacaaa |
233 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17468185 |
caaacaaaccaaatatatataatggaataataaagttagaacaacatatagtagcatcttaaatccctaattggatacgccataaacaaattcaaacaaa |
17468086 |
T |
|
| Q |
234 |
gtttcctaaatcacataattaagaaaaagggttaaaaacaactccttacatctaaatcc--tgagaaaacaatgaacacagcattcacagcccacataaa |
331 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||| ||||||||||||| |
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| T |
17468085 |
gtttcctaaatcacataattaagaaaaggggttaaaaacaactccttacatgtaaatcctttgagaaaacaatgaacgcagcattcgcagcccacataaa |
17467986 |
T |
|
| Q |
332 |
cgattggaattctacatcgaacaatcactctttcaccaccatcttggatccatcgtattttgcgttcaagaaatccagtcaacc----atcctcatttta |
427 |
Q |
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||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |
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| T |
17467985 |
cgattggtattctacatcgaacaatcactcttccaccaccatcttggatccatcgtattttgtgttcaagaaatccagtcaaccgtcactcctcatttta |
17467886 |
T |
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| Q |
428 |
ttttgcttcattatgttgtctctgct |
453 |
Q |
| |
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|||||||||||||||||| ||||||| |
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| T |
17467885 |
ttttgcttcattatgttgcctctgct |
17467860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 382
Target Start/End: Original strand, 10791607 - 10791648
Alignment:
| Q |
341 |
ttctacatcgaacaatcactctttcaccaccatcttggatcc |
382 |
Q |
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| T |
10791607 |
ttctacatcgaacaatcaccctttcaccaccgtcttcgatcc |
10791648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 242 - 416
Target Start/End: Complemental strand, 25873289 - 25873118
Alignment:
| Q |
242 |
aatcacataattaagaaaaagggttaaaaacaactccttacatctaaatcct--gagaaaacaatgaacacagcattcacagcccacataaacgattgga |
339 |
Q |
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||||| |||||||| ||||| |||||||| || |||||||||| ||||| || ||||||| |||||||||| ||||| || |||||||| ||| |
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| T |
25873289 |
aatcatataattaaaaaaaaaggttaaaagcatctccttacatgtaaattctttgagaaaataatgaacacaacattcgcaacccacata-----ttgat |
25873195 |
T |
|
| Q |
340 |
attctacatcgaacaatcactctttcaccaccatcttggatccatcgtattttgcgttcaagaaatccagtcaacca |
416 |
Q |
| |
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||||||||||||||||||| ||||||||||| |||| ||||| || |||||| || ||||| ||| ||||||||| |
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| T |
25873194 |
tttctacatcgaacaatcaccctttcaccaccgtcttcgatccgtcaaattttgagtccaagagatcaagtcaacca |
25873118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 257 - 416
Target Start/End: Complemental strand, 25874541 - 25874385
Alignment:
| Q |
257 |
aaaaagggttaaaaacaactccttacatctaaatcct--gagaaaacaatgaacacagcattcacagcccacataaacgattggaattctacatcgaaca |
354 |
Q |
| |
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||||| |||||||| |||||||||||| ||||| || ||||||| |||||||||| ||||| || |||||||| ||| |||||||||||||| |
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| T |
25874541 |
aaaaaaggttaaaagtaactccttacatgtaaattctttgagaaaataatgaacacaacattcgcaacccacata-----ttgattttctacatcgaaca |
25874447 |
T |
|
| Q |
355 |
atcactctttcaccaccatcttggatccatcgtattttgcgttcaagaaatccagtcaacca |
416 |
Q |
| |
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||||| ||||||||||| |||| ||||| || |||||| || ||||| ||| ||||||||| |
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| T |
25874446 |
atcaccctttcaccaccgtcttcgatccgtcaaattttgagtccaagagatcaagtcaacca |
25874385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 263 - 416
Target Start/End: Complemental strand, 4010871 - 4010721
Alignment:
| Q |
263 |
ggttaaaaacaactccttacatctaaatcct--gagaaaacaatgaacacagcattcacagcccacataaacgattggaattctacatcgaacaatcact |
360 |
Q |
| |
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|||||||| |||||||||||| |||||||| ||||||| |||||||||| ||||| || ||| |||| |||| |||||||||||||| |||| |
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| T |
4010871 |
ggttaaaagtaactccttacatgtaaatcctttgagaaaataatgaacacaacattcgcaacccgcatact-gatt----ttctacatcgaacagtcacc |
4010777 |
T |
|
| Q |
361 |
ctttcaccaccatcttggatccatcgtattttgcgttcaagaaatccagtcaacca |
416 |
Q |
| |
|
||||||||||| |||| |||| || |||||| || ||||||||| ||||||||| |
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|
| T |
4010776 |
ctttcaccaccgtcttcaatccgtcagattttgagtccaagaaatcaagtcaacca |
4010721 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 263 - 416
Target Start/End: Complemental strand, 2273539 - 2273389
Alignment:
| Q |
263 |
ggttaaaaacaactccttacatctaaatcct--gagaaaacaatgaacacagcattcacagcccacataaacgattggaattctacatcgaacaatcact |
360 |
Q |
| |
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|||||||| |||||||||||| |||||||| ||||||| |||||||||| ||||| || |||||||| |||| |||||||||||||| |||| |
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| T |
2273539 |
ggttaaaagtaactccttacatgtaaatcctttgagaaaataatgaacacaacattcgcaacccacatact-gatt----ttctacatcgaacagtcacc |
2273445 |
T |
|
| Q |
361 |
ctttcaccaccatcttggatccatcgtattttgcgttcaagaaatccagtcaacca |
416 |
Q |
| |
|
||||||||||| |||| |||| || |||||| || ||||||||| ||||||||| |
|
|
| T |
2273444 |
ctttcaccaccgtcttcaatccgtcagattttgagtccaagaaatcaagtcaacca |
2273389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 263 - 416
Target Start/End: Complemental strand, 39345026 - 39344876
Alignment:
| Q |
263 |
ggttaaaaacaactccttacatctaaatcct--gagaaaacaatgaacacagcattcacagcccacataaacgattggaattctacatcgaacaatcact |
360 |
Q |
| |
|
|||||||| |||||||||||| |||||||| ||||||| |||||||||| ||||| || |||||||| |||| |||||||||||||| |||| |
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| T |
39345026 |
ggttaaaagtaactccttacatgtaaatcctttgagaaaataatgaacacaacattcgcaacccacatact-gatt----ttctacatcgaacagtcacc |
39344932 |
T |
|
| Q |
361 |
ctttcaccaccatcttggatccatcgtattttgcgttcaagaaatccagtcaacca |
416 |
Q |
| |
|
||||||||||| |||| |||| || |||||| || ||||||||| ||||||||| |
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|
| T |
39344931 |
ctttcaccaccgtcttcaatccgtcagattttgagtccaagaaatcaagtcaacca |
39344876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 263 - 416
Target Start/End: Complemental strand, 35346478 - 35346328
Alignment:
| Q |
263 |
ggttaaaaacaactccttacatctaaatcct--gagaaaacaatgaacacagcattcacagcccacataaacgattggaattctacatcgaacaatcact |
360 |
Q |
| |
|
|||||||| |||||||||||| |||||||| ||||||| |||||||||| ||||| || ||| |||| |||| |||||||||||||| |||| |
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|
| T |
35346478 |
ggttaaaagtaactccttacatgtaaatcctttgagaaaataatgaacacaacattcgcaacccgcatact-gatt----ttctacatcgaacagtcacc |
35346384 |
T |
|
| Q |
361 |
ctttcaccaccatcttggatccatcgtattttgcgttcaagaaatccagtcaacca |
416 |
Q |
| |
|
||||||||||| |||| |||| || |||||| || ||||||||| ||||||||| |
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|
| T |
35346383 |
ctttcaccaccgtcttcaatccgtcagattttgagtccaagaaatcaagtcaacca |
35346328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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