View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0622_low_51 (Length: 443)
Name: NF0622_low_51
Description: NF0622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0622_low_51 |
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| [»] scaffold0411 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 29 - 432
Target Start/End: Complemental strand, 13977902 - 13977497
Alignment:
| Q |
29 |
aggaatttcattgtttgttgaacaagcaagctattttgccttctaattttcattattaacatccccttcaagctgaaataaatgtttatagttccaagct |
128 |
Q |
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| T |
13977902 |
aggaatttcattgtttgttgaacaagcaagctatttttccttctaattttcattattaacatccccttcaagctgaaataaatgtttatagttccaagct |
13977803 |
T |
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| Q |
129 |
tgttttgtagtaagttgaaaggaccatgatgaagaggctttgtcaacatgttagctacttgttcctttgatgaaaatggaagcaagagaacaatctctgc |
228 |
Q |
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| T |
13977802 |
tgttttgtagtaagttgaaaggaccatgatgaagagaatttgtcaacatgttagctacttgttcctttgatgaaaatggaagcaagagaacaatctctgc |
13977703 |
T |
|
| Q |
229 |
ctacaatttatctgttacaacgtgacaatctatttctacatgctttgtcctctcatgaaatactggattagcagatatacggataactaacttgttatca |
328 |
Q |
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||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
13977702 |
ctataatttatctgttacaacgtgacaatctatttctacatgatttgtcctctcatggaatactggattagcagatatacggataactaacttgttatca |
13977603 |
T |
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| Q |
329 |
caatatatgattaatggtgggtgttctataagaaaatc--tgagtaagtgtaacaaccattgtccttcaaaagttgcttgagctaatgccctatattcgg |
426 |
Q |
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| T |
13977602 |
caatatatgattaatggtgggtgttctatgagaaaatctttgagtaagtgtaacaaccattgtccttcaaaagttgcttgagctaatgccctatattcgg |
13977503 |
T |
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| Q |
427 |
cttcat |
432 |
Q |
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| T |
13977502 |
cttcat |
13977497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 37 - 90
Target Start/End: Original strand, 12087263 - 12087316
Alignment:
| Q |
37 |
cattgtttgttgaacaagcaagctattttgccttctaattttcattattaacat |
90 |
Q |
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| T |
12087263 |
cattgcttgttgaacaagcaagctatttttccttctaattttccctattaacat |
12087316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0411 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0411
Description:
Target: scaffold0411; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 247 - 297
Target Start/End: Complemental strand, 10177 - 10127
Alignment:
| Q |
247 |
aacgtgacaatctatttctacatgctttgtcctctcatgaaatactggatt |
297 |
Q |
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| T |
10177 |
aacgtgacaatcaacttctatatgctttgtcctctcatgaaagactggatt |
10127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 378 - 431
Target Start/End: Complemental strand, 27371740 - 27371687
Alignment:
| Q |
378 |
aacaaccattgtccttcaaaagttgcttgagctaatgccctatattcggcttca |
431 |
Q |
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| T |
27371740 |
aacaaccattgtccttcaaaggttgcttgtgctaatgtcctatactcagcttca |
27371687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 378 - 431
Target Start/End: Complemental strand, 27462090 - 27462037
Alignment:
| Q |
378 |
aacaaccattgtccttcaaaagttgcttgagctaatgccctatattcggcttca |
431 |
Q |
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| T |
27462090 |
aacaaccattgtccttcaaaggttgcttgtgctaatgtcctatactcagcttca |
27462037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 297
Target Start/End: Complemental strand, 20078797 - 20078751
Alignment:
| Q |
251 |
tgacaatctatttctacatgctttgtcctctcatgaaatactggatt |
297 |
Q |
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| T |
20078797 |
tgacaatctatttccaaatgctttgttctctcatgaaaaactggatt |
20078751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 312
Target Start/End: Original strand, 31482531 - 31482600
Alignment:
| Q |
243 |
ttacaacgtgacaatctatttctacatgctttgtcctctcatgaaatactggattagcagatatacggat |
312 |
Q |
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| T |
31482531 |
ttacaatgtggcaatctatttcaaggtgcttggtcctctcatgaaaaacaggattagcagctatatggat |
31482600 |
T |
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