View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0622_low_55 (Length: 433)
Name: NF0622_low_55
Description: NF0622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0622_low_55 |
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Alignment Details
Target: chr2 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 11 - 404
Target Start/End: Original strand, 5414543 - 5414940
Alignment:
| Q |
11 |
cacagaagcatcatatttgaattttagacattatggaaccatgacttcgagttgttgtcataatattatcaaattcatgatataaggggggttaa----c |
106 |
Q |
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| T |
5414543 |
cacagaagtatcatatttgaattttagacattatggaaccatgacttcgagttgttgtcataatattgtcaaattcatgatataaggggggttaattaac |
5414642 |
T |
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| Q |
107 |
tatatattttattccaacaaaggaattgtgttgaaatatcaaattaatgtttaagaaactatatatctactcaaactataactacttctcaaatagtttt |
206 |
Q |
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| T |
5414643 |
tatatattttattccaacaaaggaattgtgttgaaatatcaaattaatgtttaagaaactatatatctactcaaactataactacttctcaaatagtttt |
5414742 |
T |
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| Q |
207 |
tctcatcaattgtttgtcaatagcagagccacattcatttcttgcgccatttttcagcttcatataaaaaatatatgtagtatatatttatttttgtcaa |
306 |
Q |
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| T |
5414743 |
tctcatcaattgtttgtcaatagcagagccacattcatttcttgcgccatttttcagcttcatataaaaaatatatgtagtatatatttatttttgtcaa |
5414842 |
T |
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| Q |
307 |
ccatgactgataattcagaaagcaacgaaattcatcatgaggtagttttagatgtaaatagtgatgcctcacaaaattgtgaagaatcaggcatcaaa |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
5414843 |
ccatgactgataattcagaaagcaacgaaattcatcatgaggtagttttagatgtaaatagtcatgcctcacaaaattgtgaagaatcaggcatcaaa |
5414940 |
T |
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