View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0622_low_56 (Length: 433)
Name: NF0622_low_56
Description: NF0622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0622_low_56 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 30 - 321
Target Start/End: Original strand, 20691964 - 20692249
Alignment:
| Q |
30 |
tgcgccaccgcgacgagacattgtgaagaaaaacggttacggagaaaatttggatttttgtgagaatggaaaaaatgtgaagagttggttatataagtag |
129 |
Q |
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| T |
20691964 |
tgcgccaccgcgacgagacattgtgaagaaaaacggttacggagaagatttggatttttgtgagaatggagaaaatgtgaagagttggttatatgagtag |
20692063 |
T |
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| Q |
130 |
gagagtggtaactgcagtgggagaaagaaagacacactttggaaatttcgaacgnnnnnnnnaaattaaattaaattaaataaagatggaattagcgcgt |
229 |
Q |
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| T |
20692064 |
gagagtggtaactgcagtgggagaaagaaagacgcactttggaaatttcgaacgtttttt-----ttaaattaaattaaataaagatggaattagcgcgt |
20692158 |
T |
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| Q |
230 |
agttggagagattcctgatttgtttggttaggacgtttaggttctcaatctcaaaccattggaatgcttgctaccaacaaataaacaagaga |
321 |
Q |
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| T |
20692159 |
agttggagagattcctgatttgtttggttaggacgtttaggttctcaatctc-aaccattggaatgcttgctaccaacaaataaacaagaga |
20692249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 69
Target Start/End: Original strand, 20667208 - 20667246
Alignment:
| Q |
31 |
gcgccaccgcgacgagacattgtgaagaaaaacggttac |
69 |
Q |
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| T |
20667208 |
gcgccaccgcgacgagacattgcgatgaaaaacggttac |
20667246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 106; Significance: 7e-53; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 314 - 423
Target Start/End: Complemental strand, 7832237 - 7832128
Alignment:
| Q |
314 |
acaagagagtgtgaagtttgggttcccttttcagagtaagggatttgtattacttttgaaggaataaaaggttcctatgtttgaaatagtttcaaaaaga |
413 |
Q |
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| T |
7832237 |
acaagagagtgtgaagtttgggttcccttttcagactaagggatttgtattacttttgaaggaataaaaggttcctatgtttgaaatagtttcaaaaaga |
7832138 |
T |
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| Q |
414 |
ttggtctctg |
423 |
Q |
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|||||||||| |
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| T |
7832137 |
ttggtctctg |
7832128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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