View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0622_low_60 (Length: 423)
Name: NF0622_low_60
Description: NF0622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0622_low_60 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 30 - 411
Target Start/End: Complemental strand, 26499883 - 26499492
Alignment:
| Q |
30 |
aatatgaagcaatacaacaaccaatcttaacttaat-----------caaattaatcaagtttgtcaaacctgtgaaacacattcaaaaggttacgaacc |
118 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26499883 |
aatatgaagcaatacaacagccaatcttaacttaataatttcctaaacaaattaatcaagtttgtcaaacctgtgaaacacattcaaaaggttacgaacc |
26499784 |
T |
|
| Q |
119 |
aactggatcacatgaagtagggtaaagtgtgagaaaatatggtaaaatatgatcataccttgaatgtgacggaattagcatctcttacaaacctcatgtc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26499783 |
aactggatcacatgaagtagggtaaagtgtgagaaaatatggtaaaatatgatcataccttgaatgtgacggaattagcatctcttacaaacctcatgtc |
26499684 |
T |
|
| Q |
219 |
tgaagcaaatatttccactgaaactttccaaacatagagactacttcatnnnnnnnnnnttggtaaaccagagggtggtaacttcaaaataggaacatga |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26499683 |
tgaagcaaatatttccactgaaactttccaaacatagagactacttcat-aaaaaaaaattggtaaaccagagggtggtaacttcaaaataggaacatga |
26499585 |
T |
|
| Q |
319 |
tgttgactgacattataagtagtcacgtatttgcaagcaggggtggatggatttagactagtttctcaatgtatcaaaattgtaaattgtctc |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
26499584 |
tgttgactgacattataagtagtcacgtatttgcaagcaggggtggatggatctagactagtttttcaatgtatcaaaattgtaaattgtctc |
26499492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 101
Target Start/End: Complemental strand, 47862566 - 47862526
Alignment:
| Q |
60 |
cttaatcaaattaatcaagtttgtcaaacctgtgaaacacat |
101 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
47862566 |
cttaatcaaattaatcaag-ttgtcaaacctatgaaacacat |
47862526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2604 times since January 2019
Visitors: 3822