View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0622_low_62 (Length: 416)

Name: NF0622_low_62
Description: NF0622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0622_low_62
NF0622_low_62
[»] chr3 (15 HSPs)
chr3 (93-395)||(9108743-9109048)
chr3 (199-387)||(8746911-8747099)
chr3 (202-395)||(8755530-8755723)
chr3 (196-336)||(9019296-9019436)
chr3 (196-326)||(9101246-9101376)
chr3 (196-387)||(9029070-9029261)
chr3 (196-374)||(9034590-9034768)
chr3 (204-336)||(8965284-8965416)
chr3 (221-374)||(9015393-9015546)
chr3 (196-330)||(9023464-9023598)
chr3 (233-336)||(8962569-8962672)
chr3 (218-336)||(9112115-9112233)
chr3 (223-336)||(8957129-8957242)
chr3 (204-336)||(8988353-8988485)
chr3 (223-387)||(9026111-9026275)


Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-157; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 93 - 395
Target Start/End: Complemental strand, 9109048 - 9108743
Alignment:
Q  93 aaaataaacactcttgaaattaaattattctctcgct---ctcaagtatacatagatcatcacttaataatcatcactagcacagaataaaacaaaaata 189  Q
    |||||||||||||||||||||||||||||||||||||   |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  9109048 aaaataaacactcttgaaattaaattattctctcgctgatctcaagtatatatagatcatcaattaataatcatcactagcacagaataaaacaaaaata 9108949  T
Q  190 acgactatgtttttagttcttcaagagtgcaagcattgacaagacaattgaagctccgatcatggccactgaatttgtaacagatccggcagctccgaca 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  9108948 acgactatgtttttagttcttcaagagtgcaagcattgacaagacaattgaagctccgatcatggccactgaacttgtaacagatccggcagctccgaca 9108849  T
Q  290 tcaggacctgatgctggagccaatgagggactgaggtcttgagccgacaccagggaggcagcaaagataacgacgaaaaagaaggcaaaaaacttcattg 389  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9108848 tcaggacctgatgctggagccaatgagggactgaggtcttgagccgacaccagggaggcagcaaagataacgacgaaaaagaaggcaaaaaacttcattg 9108749  T
Q  390 atgatg 395  Q
    ||||||    
T  9108748 atgatg 9108743  T

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Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 199 - 387
Target Start/End: Complemental strand, 8747099 - 8746911
Alignment:
Q  199 tttttagttcttcaagagtgcaagcattgacaagacaattgaagctccgatcatggccactgaatttgtaacagatccggcagctccgacatcaggacct 298  Q
    |||||||| ||| ||||  || ||||||||||| ||||||||| |||| ||||| |||||||||||||||||||||||  ||||||| ||||||||||||    
T  8747099 tttttagtgcttgaagatggcgagcattgacaacacaattgaaactccaatcatagccactgaatttgtaacagatccaacagctccaacatcaggacct 8747000  T
Q  299 gatgctggagccaatgagggactgaggtcttgagccgacaccagggaggcagcaaagataacgacgaaaaagaaggcaaaaaacttcat 387  Q
    | |||||||||||| ||||||||||||||||| || ||  |||||| ||| || ||||| | ||||||||||||||  || ||||||||    
T  8746999 ggtgctggagccaacgagggactgaggtcttgggcagaggccagggtggcggcgaagatgaagacgaaaaagaaggagaagaacttcat 8746911  T

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Target: chr3; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 202 - 395
Target Start/End: Complemental strand, 8755723 - 8755530
Alignment:
Q  202 ttagttcttcaagagtgcaagcattgacaagacaattgaagctccgatcatggccactgaatttgtaacagatccggcagctccgacatcaggacctgat 301  Q
    ||||||||| ||||  || ||||| ||||| | ||| |||||||| ||||| || |||||||||||||||||||| ||||| ||| |||||||| ||| |    
T  8755723 ttagttcttgaagatggcgagcatagacaaaataatcgaagctccaatcatagcaactgaatttgtaacagatccagcagcaccggcatcaggatctggt 8755624  T
Q  302 gctggagccaatgagggactgaggtcttgagccgacaccagggaggcagcaaagataacgacgaaaaagaaggcaaaaaacttcattgatgatg 395  Q
    || |||||||| |||||||||||||||||||||||  ||| ||  || || |||| ||| |||||||||||||| |||||||||||||||||||    
T  8755623 gccggagccaacgagggactgaggtcttgagccgaagccacggctgctgcgaagacaacaacgaaaaagaaggcgaaaaacttcattgatgatg 8755530  T

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Target: chr3; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 196 - 336
Target Start/End: Complemental strand, 9019436 - 9019296
Alignment:
Q  196 atgtttttagttcttcaagagtgcaagcattgacaagacaattgaagctccgatcatggccactgaatttgtaacagatccggcagctccgacatcagga 295  Q
    ||||||| ||||||||||||  |||||||||||||| |||||||||||||||||||| || |||||| | |||||||||||   ||| || |||||||||    
T  9019436 atgttttcagttcttcaagatggcaagcattgacaacacaattgaagctccgatcatagcaactgaactcgtaacagatccacaagccccaacatcagga 9019337  T
Q  296 cctgatgctggagccaatgagggactgaggtcttgagccga 336  Q
    |||| ||| |||||  |||||||||| ||||||||||||||    
T  9019336 cctggtgccggagcggatgagggactaaggtcttgagccga 9019296  T

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Target: chr3; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 196 - 326
Target Start/End: Complemental strand, 9101376 - 9101246
Alignment:
Q  196 atgtttttagttcttcaagagtgcaagcattgacaagacaattgaagctccgatcatggccactgaatttgtaacagatccggcagctccgacatcagga 295  Q
    ||||||||||| ||| ||||  || ||||||||||| ||||||||| |||||||||| ||||||||| |||||||||| || ||||||||  |||||||     
T  9101376 atgtttttagtgcttaaagatggcgagcattgacaatacaattgaaactccgatcatagccactgaacttgtaacagaaccagcagctccagcatcaggg 9101277  T
Q  296 cctgatgctggagccaatgagggactgaggt 326  Q
    |||| |||||||||||| |||||||||||||    
T  9101276 cctggtgctggagccaacgagggactgaggt 9101246  T

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Target: chr3; HSP #6
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 196 - 387
Target Start/End: Complemental strand, 9029261 - 9029070
Alignment:
Q  196 atgtttttagttcttcaagagtgcaagcattgacaagacaattgaagctccgatcatggccactgaatttgtaacagatccggcagctccgacatcagga 295  Q
    ||||||||||| ||| ||||  || ||||||||||| ||||||||| |||||||||| ||| ||||| |||||| |||||| ||||||||  ||||||||    
T  9029261 atgtttttagtgcttgaagatggcgagcattgacaacacaattgaaactccgatcatagccgctgaacttgtaatagatccagcagctccagcatcagga 9029162  T
Q  296 cctgatgctggagccaatgagggactgaggtcttgagccgacaccagggaggcagcaaagataacgacgaaaaagaaggcaaaaaacttcat 387  Q
    |||| |||||||||||| || ||||| |||||||| || ||  ||| || ||| || ||||| | ||| ||||||||||  || ||||||||    
T  9029161 cctggtgctggagccaacgaaggactaaggtcttgggcagaggccacggtggcggcgaagatgatgaccaaaaagaaggagaagaacttcat 9029070  T

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Target: chr3; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 196 - 374
Target Start/End: Complemental strand, 9034768 - 9034590
Alignment:
Q  196 atgtttttagttcttcaagagtgcaagcattgacaagacaattgaagctccgatcatggccactgaatttgtaacagatccggcagctccgacatcagga 295  Q
    ||||||||||| ||| ||||  || ||||||||||| ||||||||| |||||||||| ||||| ||| ||| ||||||||| ||||||||  ||||||||    
T  9034768 atgtttttagtgcttgaagatggcgagcattgacaacacaattgaaactccgatcatagccaccgaacttgcaacagatccagcagctccagcatcagga 9034669  T
Q  296 cctgatgctggagccaatgagggactgaggtcttgagccgacaccagggaggcagcaaagataacgacgaaaaagaagg 374  Q
    |||| ||| |||||||| || ||||| |||||||| || ||  ||| |  |||||| |||||  |||||||||||||||    
T  9034668 cctggtgccggagccaacgaaggactaaggtcttgggcagaggccacgatggcagcgaagatggcgacgaaaaagaagg 9034590  T

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Target: chr3; HSP #8
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 204 - 336
Target Start/End: Complemental strand, 8965416 - 8965284
Alignment:
Q  204 agttcttcaagagtgcaagcattgacaagacaattgaagctccgatcatggccactgaatttgtaacagatccggcagctccgacatcaggacctgatgc 303  Q
    ||||||| |||| ||| ||||||||||  |||||||||||||||||||| ||||  ||| ||||||||||||||||||||||  | ||||||| || |||    
T  8965416 agttcttgaagattgcgagcattgacagcacaattgaagctccgatcattgccatagaacttgtaacagatccggcagctccagcgtcaggacttggtgc 8965317  T
Q  304 tggagccaatgagggactgaggtcttgagccga 336  Q
    ||||||||| || ||||| |||||||| |||||    
T  8965316 tggagccaacgacggactaaggtcttgggccga 8965284  T

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Target: chr3; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 221 - 374
Target Start/End: Complemental strand, 9015546 - 9015393
Alignment:
Q  221 agcattgacaagacaattgaagctccgatcatggccactgaatttgtaacagatccggcagctccgacatcaggacctgatgctggagccaatgagggac 320  Q
    ||||||||||| ||||||||| |||| | ||| | |||||||||||||||| |||| || |||||| |||||||||||| ||| |||| ||| ||||| |    
T  9015546 agcattgacaatacaattgaaactccaaccatagtcactgaatttgtaacatatccagctgctccggcatcaggacctggtgccggagacaacgaggggc 9015447  T
Q  321 tgaggtcttgagccgacaccagggaggcagcaaagataacgacgaaaaagaagg 374  Q
    ||||||||||||||||  | |  |||||||| || ||  |||||||||||||||    
T  9015446 tgaggtcttgagccgaggcgatagaggcagccaacatggcgacgaaaaagaagg 9015393  T

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Target: chr3; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 196 - 330
Target Start/End: Complemental strand, 9023598 - 9023464
Alignment:
Q  196 atgtttttagttcttcaagagtgcaagcattgacaagacaattgaagctccgatcatggccactgaatttgtaacagatccggcagctccgacatcagga 295  Q
    ||||||||||| ||| ||||  || ||||||||||| ||||  |||  ||||| ||| ||||||||| ||||||||||||| ||||||||  ||||||||    
T  9023598 atgtttttagtgcttgaagatggcgagcattgacaatacaaccgaaattccgaccatagccactgaacttgtaacagatccagcagctccagcatcagga 9023499  T
Q  296 cctgatgctggagccaatgagggactgaggtcttg 330  Q
    |||| ||| |||||||| |||||||| ||||||||    
T  9023498 cctggtgccggagccaacgagggactaaggtcttg 9023464  T

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Target: chr3; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 233 - 336
Target Start/End: Complemental strand, 8962672 - 8962569
Alignment:
Q  233 acaattgaagctccgatcatggccactgaatttgtaacagatccggcagctccgacatcaggacctgatgctggagccaatgagggactgaggtcttgag 332  Q
    |||||||||||||||||||| ||||| |||  || ||||||||||||| ||||  |||||||||||| ||||||||| || |||||||| |||||||| |    
T  8962672 acaattgaagctccgatcatagccacagaacctgcaacagatccggcaactccagcatcaggacctggtgctggagctaacgagggactaaggtcttggg 8962573  T
Q  333 ccga 336  Q
    ||||    
T  8962572 ccga 8962569  T

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Target: chr3; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 218 - 336
Target Start/End: Complemental strand, 9112233 - 9112115
Alignment:
Q  218 gcaagcattgacaagacaattgaagctccgatcatggccactgaatttgtaacagatccggcagctccgacatcaggacctgatgctggagccaatgagg 317  Q
    |||||||||||||| |||||  ||||||| ||||| ||||||| |||||||| ||||||  ||||||||  ||||||  ||| ||| |||||||| ||||    
T  9112233 gcaagcattgacaacacaatcaaagctcccatcatagccactggatttgtaagagatccaacagctccggtatcaggtgctggtgccggagccaacgagg 9112134  T
Q  318 gactgaggtcttgagccga 336  Q
    ||||||||||||| |||||    
T  9112133 gactgaggtcttgggccga 9112115  T

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Target: chr3; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 223 - 336
Target Start/End: Complemental strand, 8957242 - 8957129
Alignment:
Q  223 cattgacaagacaattgaagctccgatcatggccactgaatttgtaacagatccggcagctccgacatcaggacctgatgctggagccaatgagggactg 322  Q
    ||||||||  |||||||||||||||||||| ||||| ||| |||||||| |||||||||||||  | |||||||| | ||||||||| || || |||||     
T  8957242 cattgacagcacaattgaagctccgatcatagccacagaacttgtaacaaatccggcagctccagcgtcaggaccgggtgctggagctaacgacggacta 8957143  T
Q  323 aggtcttgagccga 336  Q
    |||||||| |||||    
T  8957142 aggtcttgggccga 8957129  T

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Target: chr3; HSP #14
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 204 - 336
Target Start/End: Complemental strand, 8988485 - 8988353
Alignment:
Q  204 agttcttcaagagtgcaagcattgacaagacaattgaagctccgatcatggccactgaatttgtaacagatccggcagctccgacatcaggacctgatgc 303  Q
    ||||||| ||||  || ||||||||||  || ||||||||||||||||| |||||  || ||||| |||| | ||||||||| || |||||||||| |||    
T  8988485 agttcttgaagatagcgagcattgacagtacgattgaagctccgatcatagccacataacttgtagcagaactggcagctccaacgtcaggacctggtgc 8988386  T
Q  304 tggagccaatgagggactgaggtcttgagccga 336  Q
    ||||| ||| |||||||| |||||||| |||||    
T  8988385 tggagacaacgagggactaaggtcttgggccga 8988353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 223 - 387
Target Start/End: Complemental strand, 9026275 - 9026111
Alignment:
Q  223 cattgacaagacaattgaagctccgatcatggccactgaatttgtaacagatccggcagctccgacatcaggacctgatgctggagccaatgagggactg 322  Q
    ||||||||| |||| |||| |||||||||| ||||||||| ||||||||||||| ||| ||||  |||||| ||||| |||||||||||| || |||||     
T  9026275 cattgacaatacaactgaaactccgatcattgccactgaacttgtaacagatccagcaactccagcatcagaacctggtgctggagccaacgaaggacta 9026176  T
Q  323 aggtcttgagccgacaccagggaggcagcaaagataacgacgaaaaagaaggcaaaaaacttcat 387  Q
    || ||||| || ||  ||| || ||| || ||||| | ||| ||||||||||  || ||||||||    
T  9026175 agatcttgggcagaggccacggtggcggcgaagatgatgaccaaaaagaaggagaagaacttcat 9026111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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