View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0622_low_63 (Length: 409)
Name: NF0622_low_63
Description: NF0622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0622_low_63 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 394; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 8 - 409
Target Start/End: Original strand, 38259020 - 38259421
Alignment:
| Q |
8 |
cgaataatatctacaacaccgtcaaacatcggtaaccgctgctgcaacggaacatgaagcggcacaagtccccttaacgcaactgcctcactgtaaggcg |
107 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38259020 |
cgaacaatatctacaacaccgtcaaacatcggtaaccgctgctgcaacggaacatgaagcggcacaagtccccttaacgcaactgcctcactgtaaggcg |
38259119 |
T |
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| Q |
108 |
ccacaacattcattgtcgttgtaaccaccgtaacattcctcaccttcattgccgccgcaaatgagccggtaccaccaccaacgtcaagtcctaaacgtaa |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
38259120 |
ccacaacattcattgtcgttgtaaccaccgtaacattcctcaccttcattgccgccgcaaatgagccggtaccaccaccaacgtcaagtcccaaacgtaa |
38259219 |
T |
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| Q |
208 |
aactgatttcgctgatttcgcgatctgaagaagctgttgaactgggagatctaagtcagaattatagctagtaaacttagaaacttcacgagaaggttca |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38259220 |
aactgatttcgctgatttcgcgatctgaagaagctgttgaactgggagatctaagtcagaattatagctagtaaacttagaaacttcacgagaaggttca |
38259319 |
T |
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| Q |
308 |
aatccgagattagggttttgacggttaaaacaatcgaatgatttacatgagtaacgatcccagataacagaggaatcaggtaaggaagaaggaaaaggat |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38259320 |
aatccgagattagggttttgacggttaaaacaatcgaatgatttacatgagtaacgatcccagataacagaggaatcaggtaaggaagaaggaaaaggat |
38259419 |
T |
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| Q |
408 |
tt |
409 |
Q |
| |
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|| |
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| T |
38259420 |
tt |
38259421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 350 - 409
Target Start/End: Original strand, 393046 - 393105
Alignment:
| Q |
350 |
ttacatgagtaacgatcccagataacagaggaatcaggtaaggaagaaggaaaaggattt |
409 |
Q |
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| T |
393046 |
ttacatgagcagcgatcccttataacagaggaatcaggtaatgaagaaggaaaaggattt |
393105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 264
Target Start/End: Original strand, 392980 - 393041
Alignment:
| Q |
203 |
cgtaaaactgatttcgctgatttcgcgatctgaagaagctgttgaactgggagatctaagtc |
264 |
Q |
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||||||| |||||||||| |||||||| |||||| ||| || |||||||||||||||||||| |
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| T |
392980 |
cgtaaaattgatttcgctaatttcgcgttctgaacaagttgctgaactgggagatctaagtc |
393041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 213 - 271
Target Start/End: Original strand, 12107389 - 12107447
Alignment:
| Q |
213 |
atttcgctgatttcgcgatctgaagaagctgttgaactgggagatctaagtcagaatta |
271 |
Q |
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|||||||||||||| | |||||||||||||||||| |||||||||||| |||||||||| |
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| T |
12107389 |
atttcgctgatttctcaatctgaagaagctgttgacctgggagatctatgtcagaatta |
12107447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 350 - 383
Target Start/End: Original strand, 12107445 - 12107478
Alignment:
| Q |
350 |
ttacatgagtaacgatcccagataacagaggaat |
383 |
Q |
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||||||||||||| |||||||||||||||||||| |
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| T |
12107445 |
ttacatgagtaaccatcccagataacagaggaat |
12107478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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