View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0622_low_65 (Length: 403)
Name: NF0622_low_65
Description: NF0622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0622_low_65 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 37 - 397
Target Start/End: Original strand, 51413081 - 51413444
Alignment:
| Q |
37 |
tatatatatttctctctaacactaattagttacattgttaattaatta---ttaatgataacagaaaattacagatcaatgaaacttcatacagaaacag |
133 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51413081 |
tatatatatttctctctaacactaattagttacattgttaattaattattattaatgataacagaaaattacagatcaatgaaacttcatacagaaacag |
51413180 |
T |
|
| Q |
134 |
agtgctgtctccctaataatgtgacagacattacatgcatggataaccaaccaacggtggtgattgagaaagtgagcaaaacggtgcgtttactaggttt |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
51413181 |
agtgctgtctccctaataatgtgacagacattacatgcatggataaccaaccaacggtggtgattgagaaattgagcaaaacggtgcgtttactaggttt |
51413280 |
T |
|
| Q |
234 |
catgttacaaaacggtgtctctaagagtaacagagtgatacaagatatgcaagaagtgatgaagagagggaaaaacatagggaaagcattgaacaacgtg |
333 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
51413281 |
catgttacaaaacggtgtctctaagagtaacagagtgatacaagatatgcaagaagtgatgaagagagggaaaaacatagggaaagcattgaacagcgtg |
51413380 |
T |
|
| Q |
334 |
atggtgaagcaccatgaagcactcacgtgccgaccacgtgatgctgatatgtatttcatctcac |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
51413381 |
atggtgaagcaccatgaagcactcacgtgccgaccacgtgatgctgatatgtatttcatttcac |
51413444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 111 - 389
Target Start/End: Original strand, 51418211 - 51418489
Alignment:
| Q |
111 |
aatgaaacttcatacagaaacagagtgctgtctccctaataatgtgacagacattacatgcatggataaccaaccaacggtggtgattgagaaagtgagc |
210 |
Q |
| |
|
||||||||| | ||||||||||| || ||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
51418211 |
aatgaaactagacacagaaacagattggtgtctccctaacaatgttacagacattacatgcatggataaacaaccaacggtggtaattgagaaagtgagc |
51418310 |
T |
|
| Q |
211 |
aaaacggtgcgtttactaggtttcatgttacaaaacggtgtctctaagagtaacagagtgatacaagatatgcaagaagtgatgaagagagggaaaaaca |
310 |
Q |
| |
|
||||| ||||||||||||||||| || ||||||||||||||||||||||| | ||||| || || |||||||||||||||||||||||||| ||||||| |
|
|
| T |
51418311 |
aaaactgtgcgtttactaggttttctgatacaaaacggtgtctctaagagtcatagagttatgcaggatatgcaagaagtgatgaagagaggaaaaaaca |
51418410 |
T |
|
| Q |
311 |
tagggaaagcattgaacaacgtgatggtgaagcaccatgaagcactcacgtgccgaccacgtgatgctgatatgtattt |
389 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
51418411 |
tagggaaagcactgaacaacgtgatggtgaagcaccatgaagcactcacgtgccgtccacgtgatgctgatatgtattt |
51418489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 340 - 390
Target Start/End: Original strand, 29323690 - 29323740
Alignment:
| Q |
340 |
aagcaccatgaagcactcacgtgccgaccacgtgatgctgatatgtatttc |
390 |
Q |
| |
|
|||||||| |||||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
29323690 |
aagcaccacgaagcactcatgtgccgtccacgtgatgctgatatgtatttc |
29323740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 278 - 321
Target Start/End: Original strand, 29323651 - 29323694
Alignment:
| Q |
278 |
atatgcaagaagtgatgaagagagggaaaaacatagggaaagca |
321 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
29323651 |
atatgcaagaagtgatgaagagaggtaaaaatatagggaaagca |
29323694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2592 times since January 2019
Visitors: 3822