View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0622_low_66 (Length: 402)
Name: NF0622_low_66
Description: NF0622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0622_low_66 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 30 - 395
Target Start/End: Original strand, 13652599 - 13652964
Alignment:
| Q |
30 |
atatataattcagctaatgaaaaacacacaagcatgattatccttccattccataaacacttaagttcattaggtgcactcgaaacaactagtgttgcat |
129 |
Q |
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| T |
13652599 |
atatataattcagctaatgaaaaacacacaagcatgattatacttccattccataaacacttaagttcattaggtgcactcgaaacaactagtgttgcat |
13652698 |
T |
|
| Q |
130 |
acaaagatataaacctgaatgtgatgcaaactgcaccttgctctgtgggaatctttgttgatcgtaatcttgggacattaccgaaaatgaaccttcgaat |
229 |
Q |
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| T |
13652699 |
acaaagatataaacctgaatgtgatgcaaactgcaccttgctctgtgggaatctttgttgatcgtaatcttgggacattaccgaaaatgaactttcgaat |
13652798 |
T |
|
| Q |
230 |
ttgtatgatatttgttggtggccctgatgaccatgaagccttaactgttgcatggaggatggcggagcacccaagaacccgattatcagtggttcgaatg |
329 |
Q |
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| T |
13652799 |
ttgtatgatatttgttggtggccctgatgaccatgaagccttaactgttgcatggaggatggcggagcacccaagaactcgattatcagtggttcgaatg |
13652898 |
T |
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| Q |
330 |
gtcctgttagatgtagctgctgaagtagatactaaaagtcataatgaaacacaaggagtattatct |
395 |
Q |
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| T |
13652899 |
ctcctgttagatgtagctgctgaagtagacactaaaagtcataatgaaacacaaggagtattatct |
13652964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 30 - 395
Target Start/End: Original strand, 13660099 - 13660464
Alignment:
| Q |
30 |
atatataattcagctaatgaaaaacacacaagcatgattatccttccattccataaacacttaagttcattaggtgcactcgaaacaactagtgttgcat |
129 |
Q |
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| T |
13660099 |
atatataactctgctaatgaaaaacgcacaagcatgattatacttccattccataaacacttaagttcattaggtgcactcgaaacaactagtgttgcat |
13660198 |
T |
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| Q |
130 |
acaaagatataaacctgaatgtgatgcaaactgcaccttgctctgtgggaatctttgttgatcgtaatcttgggacattaccgaaaatgaaccttcgaat |
229 |
Q |
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| T |
13660199 |
acaaagatataaaccagaatgtgatgcaaacttcaccttgctctgtgggaatctttgttgatcgtaatcttgggtcaataacaaaaatgaactttcgaat |
13660298 |
T |
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| Q |
230 |
ttgtatgatatttgttggtggccctgatgaccatgaagccttaactgttgcatggaggatggcggagcacccaagaacccgattatcagtggttcgaatg |
329 |
Q |
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| T |
13660299 |
ttgtatgatctttattggaggtcctgatgatcatgaagccttagctgttgcatggaggatggtggggcacccaggaacccgattatcattggttcggatg |
13660398 |
T |
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| Q |
330 |
gtcctgttagatgtagctgctgaagtagatactaaaagtcataatgaaacacaaggagtattatct |
395 |
Q |
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| T |
13660399 |
ctcttgtttgacgaagcagccgaagtaaatattataagtcattatgaagtacaaggcatattatct |
13660464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 42 - 337
Target Start/End: Complemental strand, 438164 - 437869
Alignment:
| Q |
42 |
gctaatgaaaaacacacaagcatgattatccttccattccataaacacttaagttcattaggtgcactcgaaacaactagtgttgcatacaaagatataa |
141 |
Q |
| |
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|||||||||||| ||||| ||||| ||||||||||||| ||||| |||||||| |||||||||||||||||||| | ||||||||||||||||| |
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| T |
438164 |
gctaatgaaaaatgtacaagtttgattctccttccattccacaaacaactaagttcagaaggtgcactcgaaacaactaatactgcatacaaagatataa |
438065 |
T |
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| Q |
142 |
acctgaatgtgatgcaaactgcaccttgctctgtgggaatctttgttgatcgtaatcttgggacattaccgaaaatgaaccttcgaatttgtatgatatt |
241 |
Q |
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| T |
438064 |
acttgaatgtgatgcaaagtgcaccttgctctgtgggaatatttgtggaccgtgatcttgggtcattaccaactttaaattttcgtatttgtatgatctt |
437965 |
T |
|
| Q |
242 |
tgttggtggccctgatgaccatgaagccttaactgttgcatggaggatggcggagcacccaagaacccgattatcagtggttcgaatggtcctgtt |
337 |
Q |
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| T |
437964 |
tgttggtggtcctgatgatcgcgaagccttagctgttgcatggagaatggcaggacgcataggaacccaattatcagtggttcggatgctcctgtt |
437869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 30 - 290
Target Start/End: Original strand, 28608728 - 28608988
Alignment:
| Q |
30 |
atatataattcagctaatgaaaaacacacaagcatgattatccttccattccataaacacttaagttcattaggtgcactcgaaacaactagtgttgcat |
129 |
Q |
| |
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||||| |||| || ||| |||||||| |||||| ||||| ||||||||||||| ||||| ||||| | ||||||| | ||||||||| |||||| | |
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| T |
28608728 |
atatacaatttagttaacgaaaaacatacaagcttgattctccttccattccacaaacaactaagtccggaaggtgcatttgaaacaactgatgttgcgt |
28608827 |
T |
|
| Q |
130 |
acaaagatataaacctgaatgtgatgcaaactgcaccttgctctgtgggaatctttgttgatcgtaatcttgggacattaccgaaaatgaaccttcgaat |
229 |
Q |
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||||||||||||| ||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||| | ||||| |||||||| |||| || |
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| T |
28608828 |
tcaaagatataaacttgaatgtgatgcaaagtgcaccttgctctgtgggattatttgttgatcgtaatcttgggtccttaccaaaaatgaattttcgtat |
28608927 |
T |
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| Q |
230 |
ttgtatgatatttgttggtggccctgatgaccatgaagccttaactgttgcatggaggatg |
290 |
Q |
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||||||||| |||||||| || |||||||| | ||||| ||| |||| |||||||||||| |
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| T |
28608928 |
ttgtatgatctttgttggaggtcctgatgatcgcgaagcattatctgtcgcatggaggatg |
28608988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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