View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0622_low_70 (Length: 391)

Name: NF0622_low_70
Description: NF0622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0622_low_70
NF0622_low_70
[»] chr1 (1 HSPs)
chr1 (2-380)||(26374729-26375107)


Alignment Details
Target: chr1 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 2 - 380
Target Start/End: Complemental strand, 26375107 - 26374729
Alignment:
Q  2 atctcgaacaatatggtgtcaatcttgatgaagtaaaggtaattgattatcttcagaacatatttatgacttaactgtagtattaccgtagtttttagta 101  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  26375107 atctcaaacaaaatggtgtcaatcttgatgaagtaaaggtaattgattatcttcagaacatatttatgacttaactgtagtattaccgtagtttttaata 26375008  T
Q  102 ggttcttagaattttttaggccaatggacgttacttcaagaagatattaaacaatgatttcatattgggcaaacttaattttgataactaatttggaaac 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26375007 ggttcttagaattttttaggccaatggacgttacttcaagaagatattaaacaatgatttcatattgggcaaacttaattttgataactaatttggaaac 26374908  T
Q  202 atggtgtactatattcgtatacattttgatctcgatgaggttggtctgctagaagcatgcagaccagcgtgctaggtcctacctttgttgctatgccggt 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  26374907 atggtgtactatattcgtatacattttgatctcgatgaggttggtctgctagaagcatgcagaccagcgtgctaggtcctacctttgttgctatgtcggt 26374808  T
Q  302 tttcgccttctatatttgtggagtttatccgaaaaatctgatacatttttattgaatatcgaataacttattttatgtt 380  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  26374807 tttcgccttctatatttgtggagtttatccgaaaaatctgatacatttttattgaatatcgaataacttattttttgtt 26374729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University