View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0622_low_73 (Length: 375)
Name: NF0622_low_73
Description: NF0622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0622_low_73 |
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Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 23943470 - 23943735
Alignment:
| Q |
1 |
aatatgtgatggaaaatgcttcaactaatgggaaatcagaatttgtttcttatttagaagatggcatcttggtgaacaaagagaataatgagttgcttaa |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23943470 |
aatatgcgatggaaaatgcttcaactaatgggaaatcagaatttgtttcttatttagaagatggcatcttggtgaacaaagagaataatgagttgcttaa |
23943569 |
T |
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| Q |
101 |
aaattttgatatacttggatggtggaaacaaaatggtgtgaaatatccaactttgc-aaaagattgcaagagactttttggcaattccaatctccacagt |
199 |
Q |
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| T |
23943570 |
aatttttgatatacttggatggtggaaacaaaatggtgtgaaatatccaactttgcaaaaagattgcaagagactttttggcaattccaatctccacagt |
23943669 |
T |
|
| Q |
200 |
tgcttcggaatctgcatttagtactagtggccgtgttgtaactccacaacgtagcaggttaaagga |
265 |
Q |
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| T |
23943670 |
tgcttcggaatatgcatttagtactagtggccgtgttgtaactccacaacgtagtaggttgaagga |
23943735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 317 - 347
Target Start/End: Original strand, 23943736 - 23943766
Alignment:
| Q |
317 |
gcaaggtagtacatttaatgttaaattcatc |
347 |
Q |
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| T |
23943736 |
gcaaggtagtacatttaatgttaaattcatc |
23943766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 143 - 346
Target Start/End: Original strand, 44630565 - 44630768
Alignment:
| Q |
143 |
atatccaactttgcaaaagattgcaagagactttttggcaattccaatctccacagttgcttcggaatctgcatttagtactagtggccgtgttgtaact |
242 |
Q |
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| T |
44630565 |
atatccaactttgcaaaagattgcaagagactttttggcaattccaatctccacgattgcttcggaatctgcatttagtactagtggccgtgttgtaact |
44630664 |
T |
|
| Q |
243 |
ccacaacgtagcaggttaaaggaagatacattagaggccttgatgtgcagccaaaattggttccgaacagaaatgcaaggtagtacatttaatgttaaat |
342 |
Q |
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| T |
44630665 |
ctacaacgtagtaggttgaaggaagacacattagaggctttgatgtgcagccaagattggttccgaacagaaatgcaaggtagtacatttaatgttaaat |
44630764 |
T |
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| Q |
343 |
tcat |
346 |
Q |
| |
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|||| |
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| T |
44630765 |
tcat |
44630768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 44630457 - 44630568
Alignment:
| Q |
1 |
aatatgtgatggaaaatgcttcaactaatgggaaatcagaatttgtttcttatttagaagatggcatcttggtgaacaaagagaataatgagttgcttaa |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||| |
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| T |
44630457 |
aatatgtgatggaaaatgcttcaactaatgaaaaatcagaatttgtttcttatttagaagatgacatcttagtgaacaaagagaataatgagttccttaa |
44630556 |
T |
|
| Q |
101 |
aaattttgatat |
112 |
Q |
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|||||||||||| |
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| T |
44630557 |
aaattttgatat |
44630568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 133; Significance: 4e-69; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 195 - 347
Target Start/End: Complemental strand, 36974579 - 36974427
Alignment:
| Q |
195 |
acagttgcttcggaatctgcatttagtactagtggccgtgttgtaactccacaacgtagcaggttaaaggaagatacattagaggccttgatgtgcagcc |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |||||||| ||||||||||| ||||||||||||| |
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| T |
36974579 |
acagttgcttcggaatctgcatttagtactagtggccgtgatgtaactccacaacgtagtaggttgaaggaagacacattagaggctttgatgtgcagcc |
36974480 |
T |
|
| Q |
295 |
aaaattggttccgaacagaaatgcaaggtagtacatttaatgttaaattcatc |
347 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36974479 |
aaaattggttccgaacagaaatgcaaggtagtacatttaatgttaaattcatc |
36974427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 271 - 347
Target Start/End: Complemental strand, 7025064 - 7024988
Alignment:
| Q |
271 |
cattagaggccttgatgtgcagccaaaattggttccgaacagaaatgcaaggtagtacatttaatgttaaattcatc |
347 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
7025064 |
cattagaggctttgatgtgcagccaaaattggttccgaacagaaatgcaaggtagtatatttaatgttaaattcatc |
7024988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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