View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0622_low_77 (Length: 371)

Name: NF0622_low_77
Description: NF0622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0622_low_77
NF0622_low_77
[»] chr8 (2 HSPs)
chr8 (4-321)||(33927387-33927714)
chr8 (283-319)||(9083428-9083464)
[»] chr2 (1 HSPs)
chr2 (283-319)||(6414632-6414668)


Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 4 - 321
Target Start/End: Complemental strand, 33927714 - 33927387
Alignment:
Q  4 atctcgaataatatttgggaggcagaagttattgtggaaccttgcaggcttggcgagaaggtgtgcctccaatgtccttagggagtgaagatggagatgt 103  Q
    |||||| ||| |||||||||||||||  |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  33927714 atctcgtatactatttgggaggcagatattattgtggaaccttgtaggcttggcgagaaggtgtgcctccaatgtccttagggagtgaagatggagatgc 33927615  T
Q  104 ttcatatgtattcgtttgtttttgaggatatagggtttaagtttccttttactaactttgagtgtgatttccttaaggct----------ctccatcaca 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          || |||||||    
T  33927614 ttcatatgtattcgtttgtttttgaggatatagggtttaagtttccttttactaactttgagtgtgatttccttaaggctcttaacgtcgcttcatcaca 33927515  T
Q  194 acttcatccaaactgttgtgcgttcatgtgcagtttcgagatcttgtgcgaaagcttggggtttcgccaatgtttttaaaattggaccagaggttaaacc 293  Q
    ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  33927514 acttcatccaaactgttgtgcgttcatgtgcggtttcgagatctcgtgcgaaagcttggggtttcgccaatgtttataaaattggaccagaggttaaacc 33927415  T
Q  294 gttgtgatgttcgggtcaaggttcaacc 321  Q
    ||||||||||||||||||||||||||||    
T  33927414 gttgtgatgttcgggtcaaggttcaacc 33927387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 319
Target Start/End: Original strand, 9083428 - 9083464
Alignment:
Q  283 gaggttaaaccgttgtgatgttcgggtcaaggttcaa 319  Q
    ||||||||| ||||||||| |||||||||||||||||    
T  9083428 gaggttaaatcgttgtgatattcgggtcaaggttcaa 9083464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 319
Target Start/End: Original strand, 6414632 - 6414668
Alignment:
Q  283 gaggttaaaccgttgtgatgttcgggtcaaggttcaa 319  Q
    ||||||||| ||||||||| |||||||||||||||||    
T  6414632 gaggttaaatcgttgtgatattcgggtcaaggttcaa 6414668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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