View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0622_low_80 (Length: 348)
Name: NF0622_low_80
Description: NF0622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0622_low_80 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 29 - 348
Target Start/End: Complemental strand, 39155307 - 39154988
Alignment:
| Q |
29 |
acctaaaccacttaaggtgtagtctttttatatcaaaaccatcaagcaatatctcaccacatgtaggatcatagaatctttcaagcaaagagattatagt |
128 |
Q |
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| T |
39155307 |
acctaaaccacttaaggtgtagtctttttatgtcaaaaccatcaagcaatatctcaccacatgtaggatcatagaatctttcaagcaaagagattatagt |
39155208 |
T |
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| Q |
129 |
agattttccagaaccacttcctccaaccaggcccactgttttacatgcctgaactttaagattgagtccttggagaatcaaggtatctggccttgaaggg |
228 |
Q |
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| T |
39155207 |
agattttccagaaccacttcctccaaccaggcccactgttttacatgcctgaactttaagattgagtccttggagaatcagggtatctggccttgaaggg |
39155108 |
T |
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| Q |
229 |
taactaaactcaacatctttaaatgtaatctctcctcttgtatgcttcaaaatccttcctttttcttttgtagagtttatggttggctttctgtcaatca |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39155107 |
taactaaactcaacatctttaaatgtaatctctcctcttgtatgcttcaaaatccttcctttttcttttgtagagtttatggttggctttctgtcaatca |
39155008 |
T |
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| Q |
329 |
tctcgaaaatccgcgtagct |
348 |
Q |
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|||||||||||||||||||| |
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| T |
39155007 |
tctcgaaaatccgcgtagct |
39154988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 128 - 244
Target Start/End: Complemental strand, 29126017 - 29125901
Alignment:
| Q |
128 |
tagattttccagaaccacttcctccaaccaggcccactgttttacatgcctgaactttaagattgagtccttggagaatcaaggtatctggccttgaagg |
227 |
Q |
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|||||||| |||||||||||| |||||| || || ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||| |
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| T |
29126017 |
tagatttttcagaaccacttcgtccaactagtcctactgttttacatgcctgaactttaagattgagtccctggagaatcactgtatctggccgtgaagg |
29125918 |
T |
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| Q |
228 |
gtaactaaactcaacat |
244 |
Q |
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| T |
29125917 |
gtaactaaagtcaacat |
29125901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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