View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0622_low_87 (Length: 317)
Name: NF0622_low_87
Description: NF0622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0622_low_87 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 150; Significance: 3e-79; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 151 - 317
Target Start/End: Complemental strand, 41656744 - 41656574
Alignment:
| Q |
151 |
aagttggaattggaacttaagagggtttcaagggggatcaaagtgacatttggaacttgaatggttatggagtatat----tctatgagagaagcacaac |
246 |
Q |
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| T |
41656744 |
aagttggaattggaacttaagagggtttcaagggggatcaaagtgacatttggaacttgaatggttatggagtatatatattctgtgagagaagcacaac |
41656645 |
T |
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| Q |
247 |
catataaggtgttaacagggggaatcacacaaccataaccctttttgaacaagtaatcatcaaacttgttc |
317 |
Q |
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| T |
41656644 |
catataaggtgttaacagggggaatcacacaaccataaccctttttgaacaagtaatcatcaaacttgttc |
41656574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 96 - 132
Target Start/End: Complemental strand, 41656778 - 41656742
Alignment:
| Q |
96 |
tctttaaaagtaggtggatgtctgtctgtggggaaag |
132 |
Q |
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| T |
41656778 |
tctttaaaagtaggtggatgtctgtctgtggggaaag |
41656742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 291
Target Start/End: Complemental strand, 41661645 - 41661603
Alignment:
| Q |
249 |
tataaggtgttaacagggggaatcacacaaccataaccctttt |
291 |
Q |
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| T |
41661645 |
tataaggtgttaacagggggaaccacacaaccacaaccatttt |
41661603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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