View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0622_low_88 (Length: 316)

Name: NF0622_low_88
Description: NF0622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0622_low_88
NF0622_low_88
[»] chr3 (8 HSPs)
chr3 (53-311)||(26738361-26738622)
chr3 (53-311)||(26715125-26715383)
chr3 (52-296)||(26693204-26693448)
chr3 (77-304)||(26676786-26677013)
chr3 (77-273)||(26689077-26689273)
chr3 (53-213)||(26700050-26700210)
chr3 (53-230)||(26735190-26735367)
chr3 (53-298)||(26745409-26745657)
[»] chr7 (1 HSPs)
chr7 (105-149)||(21097288-21097332)


Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 53 - 311
Target Start/End: Complemental strand, 26738622 - 26738361
Alignment:
Q  53 ttttgtacgatacgggaaatctcattctcagagaacataacacaaatggtttcattttgtggcaaagttttgattttccaacagataccctccttcccga 152  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26738622 ttttgtacgatacgggaaatctcattctcagagaacataacacaaatggtttcattttgtggcaaagttttgattttccaacagataccctccttcccga 26738523  T
Q  153 tcaaagtttcacaaggtacatgaaccttgtttcgtccaaaagagac---accaactattcctctagctgctacaagcttttctttgacaacgataatctt 249  Q
    ||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26738522 tcaaagtttcacaaggtacatgaaccttgtttcgtccaaaagagacaccaccaactattcctctagctgctacaagcttttctttgacaacgataatctt 26738423  T
Q  250 ctccgtcttctctatgatggccctggagattcaagcgtttattggccagatcctttgcttct 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  26738422 ctccgtcttctctatgatggccctggagattcaagcgtttattggccagatcctttgtttct 26738361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 53 - 311
Target Start/End: Complemental strand, 26715383 - 26715125
Alignment:
Q  53 ttttgtacgatacgggaaatctcattctcagagaacataacacaaatggtttcattttgtggcaaagttttgattttccaacagataccctccttcccga 152  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  26715383 ttttgtacgatacgggaaatctcattttcagagaacataacaaaaatggtttcattttgtggcgaagttttgattttccaacagataccctccttcccga 26715284  T
Q  153 tcaaagtttcacaaggtacatgaaccttgtttcgtccaaaagagacaccaactattcctctagctgctacaagcttttctttgacaacgataatcttctc 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26715283 tcaaagtttcacaaggtacatgaaccttgtttcgtccaaaagagacaccaactattcctctagctgctacaagcttttctttgacaacgataatcttctc 26715184  T
Q  253 cgtcttctctatgatggccctggagattcaagcgtttattggccagatcctttgcttct 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  26715183 cgtcttctctatgatggccctggagattcaagcgtttattggccagatcctttgtttct 26715125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 52 - 296
Target Start/End: Original strand, 26693204 - 26693448
Alignment:
Q  52 attttgtacgatacgggaaatctcattctcagagaacataacacaaatggtttcattttgtggcaaagttttgattttccaacagataccctccttcccg 151  Q
    |||||||||||||| ||||||||| | |||||||| || |||| || ||||||| ||||||||||||| ||||||||||||||||||||||||||||| |    
T  26693204 attttgtacgatacaggaaatctcgtcctcagagagcacaacaaaattggtttcgttttgtggcaaagctttgattttccaacagataccctccttcctg 26693303  T
Q  152 atcaaagtttcacaaggtacatgaaccttgtttcgtccaaaagagacaccaactattcctctagctgctacaagcttttctttgacaacgataatcttct 251  Q
    ||||||||||||||||| ||||||| |||||||| |||||||| | || ||| ||||||||  |||  ||||| |||||||| || ||||| |||||  |    
T  26693304 atcaaagtttcacaaggcacatgaaacttgtttcctccaaaagtggcaacaaatattcctcgggcttttacaaacttttcttcgataacgacaatctctt 26693403  T
Q  252 ccgtcttctctatgatggccctggagattcaagcgtttattggcc 296  Q
     |||||||||||||||||||||  || ||||||  ||||||||||    
T  26693404 gcgtcttctctatgatggccctcaagtttcaagtatttattggcc 26693448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 77 - 304
Target Start/End: Complemental strand, 26677013 - 26676786
Alignment:
Q  77 ttctcagagaacataacacaaatggtttcattttgtggcaaagttttgattttccaacagataccctccttcccgatcaaagtttcacaaggtacatgaa 176  Q
    ||||| ||||||  || |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  26677013 ttctccgagaacgcaaaacaaatggtttcattttgtggcgaagctttgattttccaacagataccctccttcctgatcaaagtttcacaaggtacatgaa 26676914  T
Q  177 ccttgtttcgtccaaaagagacaccaactattcctctagctgctacaagcttttctttgacaacgataatcttctccgtcttctctatgatggccctgga 276  Q
     |||||||| || ||||| |||| |   ||||| ||  | | ||| |||||| | ||  |||| ||||||||| |  ||||||||||||||||||||  |    
T  26676913 acttgtttcctcgaaaagtgacaacgtatattcatcagggttctataagcttcttttcaacaatgataatcttttaagtcttctctatgatggccctcaa 26676814  T
Q  277 gattcaagcgtttattggccagatcctt 304  Q
    | ||| ||  |||| |||||||||||||    
T  26676813 gtttctagtatttactggccagatcctt 26676786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 77 - 273
Target Start/End: Original strand, 26689077 - 26689273
Alignment:
Q  77 ttctcagagaacataacacaaatggtttcattttgtggcaaagttttgattttccaacagataccctccttcccgatcaaagtttcacaaggtacatgaa 176  Q
    ||||| ||||||  || |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  26689077 ttctccgagaacgcaaaacaaatggtttcattttgtggcgaagctttgattttccaacagataccctccttcctgatcaaagtttcacaaggtacatgaa 26689176  T
Q  177 ccttgtttcgtccaaaagagacaccaactattcctctagctgctacaagcttttctttgacaacgataatcttctccgtcttctctatgatggccct 273  Q
     |||||||| || ||||| |||| |   ||||| ||  | | ||| |||||| | ||  |||| ||||||||| |  ||||||||||||||||||||    
T  26689177 acttgtttcctcgaaaagtgacaacgtatattcatcagggttctataagcttcttttcaacaatgataatcttttaagtcttctctatgatggccct 26689273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 53 - 213
Target Start/End: Complemental strand, 26700210 - 26700050
Alignment:
Q  53 ttttgtacgatacgggaaatctcattctcagagaacataacacaaatggtttcattttgtggcaaagttttgattttccaacagataccctccttcccga 152  Q
    |||||||||| || ||||| ||| |||| ||||||||  ||| |||||||||| |||||||||||||||||||||| ||||||||||| |||||||| ||    
T  26700210 ttttgtacgaaacaggaaacctcgttctgagagaacaagacataaatggtttcgttttgtggcaaagttttgatttcccaacagatactctccttcctga 26700111  T
Q  153 tcaaagtttcacaaggtacatgaaccttgtttcgtccaaaagagacaccaactattcctct 213  Q
    ||||  ||| ||  |||||||||||||||||||||| | ||| | || |||||||||||||    
T  26700110 tcaagatttgactgggtacatgaaccttgtttcgtcaagaagtgtcaacaactattcctct 26700050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 53 - 230
Target Start/End: Complemental strand, 26735367 - 26735190
Alignment:
Q  53 ttttgtacgatacgggaaatctcattctcagagaacataacacaaatggtttcattttgtggcaaagttttgattttccaacagataccctccttcccga 152  Q
    |||||||||| || ||||| ||| |||| ||||||||  ||| |||||||||| |||||||||||||||||||||| ||||||||||| |||||||| ||    
T  26735367 ttttgtacgaaacaggaaacctcgttctgagagaacaagacataaatggtttcgttttgtggcaaagttttgatttcccaacagatactctccttcctga 26735268  T
Q  153 tcaaagtttcacaaggtacatgaaccttgtttcgtccaaaagagacaccaactattcctctagctgctacaagctttt 230  Q
    |||||  || |    || |||||||||||||||||  ||||| | || ||||||||||||| | | ||||||||||||    
T  26735267 tcaaaaattgattgagttcatgaaccttgtttcgttgaaaagtgtcaacaactattcctctggttcctacaagctttt 26735190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 53 - 298
Target Start/End: Complemental strand, 26745657 - 26745409
Alignment:
Q  53 ttttgtacgatacgggaaatctcattctcagagaacataacacaaatggtttcatttt---gtggcaaagttttgattttccaacagataccctccttcc 149  Q
    |||||| ||| || ||||||||||||||  ||||||| ||||| | || || || |||   |||||| ||||||||||  ||||||||||| ||||||||    
T  26745657 ttttgtgcgacacaggaaatctcattcttcgagaacacaacactattgtttccaatttcttgtggcagagttttgattccccaacagatactctccttcc 26745558  T
Q  150 cgatcaaagtttcacaaggtacatgaaccttgtttcgtccaaaagagacaccaactattcctctagctgctacaagcttttctttgacaacgataatctt 249  Q
     |||||||||||||||||||||||| | ||  |||| || |||||  | |   ||||||| ||| ||| |||||||||||| ||  || |||| ||||||    
T  26745557 tgatcaaagtttcacaaggtacatgcaactcatttcctcaaaaagcaagaatgactattcatctggcttctacaagcttttattcaactacgacaatctt 26745458  T
Q  250 ctccgtcttctctatgatggccctggagattcaagcgtttattggccag 298  Q
    ||| ||||| |||| ||||| |||  || |||||| ||||| |||||||    
T  26745457 ctctgtcttatctacgatggacctcaagtttcaagagtttactggccag 26745409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 149
Target Start/End: Original strand, 21097288 - 21097332
Alignment:
Q  105 cattttgtggcaaagttttgattttccaacagataccctccttcc 149  Q
    |||||||||||| |||||||| | |||||||||||| ||||||||    
T  21097288 cattttgtggcagagttttgactctccaacagatactctccttcc 21097332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 591 times since January 2019
Visitors: 3836