View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0622_low_96 (Length: 297)

Name: NF0622_low_96
Description: NF0622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0622_low_96
NF0622_low_96
[»] chr8 (3 HSPs)
chr8 (33-251)||(43654317-43654535)
chr8 (150-289)||(43658909-43659052)
chr8 (160-289)||(38640642-38640775)
[»] chr2 (4 HSPs)
chr2 (33-290)||(8363300-8363561)
chr2 (161-242)||(8365589-8365670)
chr2 (234-289)||(33357996-33358055)
chr2 (116-160)||(14636371-14636415)
[»] chr1 (3 HSPs)
chr1 (124-252)||(47323309-47323434)
chr1 (154-250)||(13016342-13016438)
chr1 (153-252)||(47326883-47326982)
[»] chr4 (4 HSPs)
chr4 (128-290)||(6799125-6799291)
chr4 (162-230)||(42528323-42528391)
chr4 (126-287)||(8996039-8996206)
chr4 (154-287)||(8986594-8986733)
[»] chr7 (3 HSPs)
chr7 (133-289)||(41455343-41455503)
chr7 (162-289)||(41451688-41451820)
chr7 (162-289)||(32355239-32355370)
[»] scaffold0067 (1 HSPs)
scaffold0067 (162-289)||(7972-8103)
[»] chr5 (3 HSPs)
chr5 (153-289)||(40254861-40254998)
chr5 (117-282)||(26050014-26050185)
chr5 (216-282)||(26053428-26053498)
[»] chr6 (1 HSPs)
chr6 (117-282)||(27074981-27075152)
[»] chr3 (4 HSPs)
chr3 (162-289)||(28703673-28703804)
chr3 (148-225)||(32893717-32893794)
chr3 (117-249)||(36611911-36612044)
chr3 (253-289)||(32893810-32893846)


Alignment Details
Target: chr8 (Bit Score: 167; Significance: 2e-89; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 33 - 251
Target Start/End: Complemental strand, 43654535 - 43654317
Alignment:
Q  33 gtaacattaacaaactatgtggtgtatgctacaaagcctgagtgccggtaaatacggaagaagtgaaatcatcatgcttgttaccattgtcataatcgtc 132  Q
    ||||||| ||||||||||||||||||||| |||||||| ||| || |||||||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  43654535 gtaacatcaacaaactatgtggtgtatgcgacaaagccggagcgctggtaaataaggaagaagtgaaatcatcatgctcgttaccattgtcataatcgtc 43654436  T
Q  133 tccagccataattcattagattgttgttcgcggatgattgaaggatcacaacctgcaaaacaagataatgaaacataaaaccagaggcgtgacaatgtca 232  Q
    |||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||  |||||||||||||||||    
T  43654435 tccaaccataattccttagattgttgttcgcggatgactgaaggatcacaacctgcaaaacaagaaaatgaaacataaaacatgaggcgtgacaatgtca 43654336  T
Q  233 ctgaactaaggaattatcc 251  Q
    |||||||||||||||||||    
T  43654335 ctgaactaaggaattatcc 43654317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 150 - 289
Target Start/End: Complemental strand, 43659052 - 43658909
Alignment:
Q  150 agattgttgttcgcggatgattgaaggatcacaacctgcaaaacaagataatgaaacataaaaccagaggcgtgacaatgtcactgaactaaggaattat 249  Q
    ||||||||||| |||||| | ||||||||||||||||||||||||||| |||||||| ||||| | ||||| ||||||||||||| ||||||||||||||    
T  43659052 agattgttgtttgcggataactgaaggatcacaacctgcaaaacaagaaaatgaaacgtaaaatctgaggcatgacaatgtcactaaactaaggaattat 43658953  T
Q  250 ccg----attgcgcaactccctcggagtacaacaggttcatctc 289  Q
    |||    |||||||||||||| | ||||||||| ||||| ||||    
T  43658952 ccgcagaattgcgcaactcccccagagtacaaccggttcttctc 43658909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 160 - 289
Target Start/End: Original strand, 38640642 - 38640775
Alignment:
Q  160 tcgcggatgattgaaggatcacaacctgcaaaacaagataatgaaacataaaaccagaggcgtgacaatgtcactgaactaaggaattatccg----att 255  Q
    |||||||||| |||||||||||||||||||||| || | ||| |||| ||||||| |||||||||| ||||||||||||||||||||||||||    |||    
T  38640642 tcgcggatgactgaaggatcacaacctgcaaaataataaaataaaacgtaaaacctgaggcgtgactatgtcactgaactaaggaattatccgcagaatt 38640741  T
Q  256 gcgcaactccctcggagtacaacaggttcatctc 289  Q
    | ||||||||| | ||||||||||||||||||||    
T  38640742 gtgcaactcccccagagtacaacaggttcatctc 38640775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 137; Significance: 1e-71; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 33 - 290
Target Start/End: Complemental strand, 8363561 - 8363300
Alignment:
Q  33 gtaacattaacaaactatgtggtgtatgctacaaagcctgagtgccggtaaatacggaagaagtgaaatcatcatgcttgttaccattgtcataatcgtc 132  Q
    ||||||| | |||||||| |||||||||| ||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||| ||    
T  8363561 gtaacatcagcaaactatatggtgtatgcgacaaagcctgagtgccggtaactgcggaagaagtgaaatcatcatacttgttaccattgtcataatcttc 8363462  T
Q  133 tccagccataattcattagattgttgttcgcggatgattgaaggatcacaacctgcaaaacaagataatgaaacataaaaccagaggcgtgacaatgtca 232  Q
    ||||| |||||||| ||||||||||    ||||| |  ||||||||||||||||||||||||||| |||||||  ||||||| || ||||||| ||||||    
T  8363461 tccagtcataattccttagattgttaaatgcggaaggctgaaggatcacaacctgcaaaacaagaaaatgaaaggtaaaacctgatgcgtgactatgtca 8363362  T
Q  233 ctgaactaaggaattatccg----attgcgcaactccctcggagtacaacaggttcatctca 290  Q
    ||||||||||||||||||||    |||||||||||||  | |||||||||||| ||||||||    
T  8363361 ctgaactaaggaattatccgcagaattgcgcaactcctccagagtacaacagggtcatctca 8363300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 161 - 242
Target Start/End: Complemental strand, 8365670 - 8365589
Alignment:
Q  161 cgcggatgattgaaggatcacaacctgcaaaacaagataatgaaacataaaaccagaggcgtgacaatgtcactgaactaag 242  Q
    ||||||||| ||||||||||||||||| |||||||||  |||||| |||||||| |||||||||| ||||||||||||||||    
T  8365670 cgcggatgactgaaggatcacaacctgaaaaacaagaacatgaaaaataaaacctgaggcgtgactatgtcactgaactaag 8365589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 289
Target Start/End: Complemental strand, 33358055 - 33357996
Alignment:
Q  234 tgaactaaggaattatccg----attgcgcaactccctcggagtacaacaggttcatctc 289  Q
    |||||||||||||||||||    |||||||||||||  | ||||||||||||||||||||    
T  33358055 tgaactaaggaattatccgtagaattgcgcaactcctccagagtacaacaggttcatctc 33357996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 160
Target Start/End: Original strand, 14636371 - 14636415
Alignment:
Q  116 ccattgtcataatcgtctccagccataattcattagattgttgtt 160  Q
    ||||||| | |||| |||||||||||||||| |||||||||||||    
T  14636371 ccattgttagaatcctctccagccataattccttagattgttgtt 14636415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 6e-37; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 124 - 252
Target Start/End: Complemental strand, 47323434 - 47323309
Alignment:
Q  124 ataatcgtctccagccataattcattagattgttgttcgcggatgattgaaggatcacaacctgcaaaacaagataatgaaacataaaaccagaggcgtg 223  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||  |||||||    |||||    
T  47323434 ataatcgtctccagccataattccttagattgttgttcgcggatgactgaaggatcacaacctgcaaaacaagaaaataaaaagtaaaacc---tgcgtg 47323338  T
Q  224 acaatgtcactgaactaaggaattatccg 252  Q
    || ||||||| ||||||||||||||||||    
T  47323337 actatgtcaccgaactaaggaattatccg 47323309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 154 - 250
Target Start/End: Original strand, 13016342 - 13016438
Alignment:
Q  154 tgttgttcgcggatgattgaaggatcacaacctgcaaaacaagataatgaaacataaaaccagaggcgtgacaatgtcactgaactaaggaattatc 250  Q
    |||| ||||||||||| | |||||||| |||||||||||  ||| ||| |||| ||||| | |||||||||||||||||||||||||||||||||||    
T  13016342 tgttattcgcggatgactaaaggatcataacctgcaaaaacagaaaataaaacgtaaaatctgaggcgtgacaatgtcactgaactaaggaattatc 13016438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 153 - 252
Target Start/End: Complemental strand, 47326982 - 47326883
Alignment:
Q  153 ttgttgttcgcggatgattgaaggatcacaacctgcaaaacaagataatgaaacataaaaccagaggcgtgacaatgtcactgaactaaggaattatccg 252  Q
    |||||||||||||||||  |||||||||||||||||||||||||| | | ||   |||||   |||||||||| ||||||| ||||||||||| ||||||    
T  47326982 ttgttgttcgcggatgacagaaggatcacaacctgcaaaacaagaaagtaaagagtaaaatttgaggcgtgactatgtcacagaactaaggaaatatccg 47326883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 128 - 290
Target Start/End: Complemental strand, 6799291 - 6799125
Alignment:
Q  128 tcgtctccagccataattcattagattgttgttcgcggatgattgaaggatcacaacctgcaaaacaagataatgaaacataaaaccagaggcgtgacaa 227  Q
    ||||||||||||||||||| ||| ||||||||| |||||||| |||||||||||||||||||||| |||| ||| |||  ||||||| | |||||||| |    
T  6799291 tcgtctccagccataattccttaaattgttgtttgcggatgactgaaggatcacaacctgcaaaataagaaaataaaaagtaaaacctgtggcgtgacta 6799192  T
Q  228 tgtcactgaactaaggaattatccg----attgcgcaactccctcggagtacaacaggttcatctca 290  Q
    |||||||||||||||||||||||||    ||||||| |||||| |  ||||| |||||||| |||||    
T  6799191 tgtcactgaactaaggaattatccgcagaattgcgcgactcccccaaagtactacaggttcttctca 6799125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 162 - 230
Target Start/End: Original strand, 42528323 - 42528391
Alignment:
Q  162 gcggatgattgaaggatcacaacctgcaaaacaagataatgaaacataaaaccagaggcgtgacaatgt 230  Q
    |||||||| ||||||||||||||||||||||||||| |||||||| ||||||  |||||||||| ||||    
T  42528323 gcggatgactgaaggatcacaacctgcaaaacaagaaaatgaaacgtaaaacttgaggcgtgactatgt 42528391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 126 - 287
Target Start/End: Original strand, 8996039 - 8996206
Alignment:
Q  126 aatcgtctccagccataattcattagattgttgttcgcggatgattgaaggatcacaacctgcaaaacaagataatgaaacataaaaccagaggcgtgac 225  Q
    |||| ||| |||||||||||| ||||||||||||  |||||||| |||||||||||| ||||||||||||   ||| |||| ||||| |  ||| ||||     
T  8996039 aatcttcttcagccataattccttagattgttgtatgcggatgactgaaggatcacatcctgcaaaacaatgaaataaaacgtaaaatctaaggtgtgat 8996138  T
Q  226 aa--tgtcactgaactaaggaattatccg----attgcgcaactccctcggagtacaacaggttcatc 287  Q
     |  |||||||| ||||||||||||||||    ||||| |||||||| |  | |||||||||||||||    
T  8996139 tacgtgtcactggactaaggaattatccgcagaattgcacaactcccccaaaatacaacaggttcatc 8996206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 287
Target Start/End: Original strand, 8986594 - 8986733
Alignment:
Q  154 tgttgttcgcggatgattgaaggatcacaacctgcaaaacaagataatgaaacataaaaccagaggcgtgacaa--tgtcactgaactaaggaattatcc 251  Q
    |||||| || ||||||  ||||||||||| ||||||||||||   ||| |||| ||||| | |||||||||| |  |||||||| |||||||||||||||    
T  8986594 tgttgtacgtggatgaccgaaggatcacaccctgcaaaacaatgaaataaaacgtaaaatctgaggcgtgactacgtgtcactggactaaggaattatcc 8986693  T
Q  252 g----attgcgcaactccctcggagtacaacaggttcatc 287  Q
    |    |||||||||||||| | |  ||||| |||||||||    
T  8986694 gtagaattgcgcaactcccccagcatacaaaaggttcatc 8986733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 9e-33; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 133 - 289
Target Start/End: Original strand, 41455343 - 41455503
Alignment:
Q  133 tccagccataattcattagattgttgttcgcggatgattgaaggatcacaacctgcaaaacaagataatgaaacataaaaccagaggcgtgacaatgtca 232  Q
    ||||| |||||||| |||||||||||   |||||||| |||||||||| ||||| |||||||||| ||| |||  ||||| | |||||||||| ||||||    
T  41455343 tccagtcataattccttagattgttgactgcggatgactgaaggatcataacctacaaaacaagaaaataaaaagtaaaatctgaggcgtgactatgtca 41455442  T
Q  233 ctgaactaaggaattatccg----attgcgcaactccctcggagtacaacaggttcatctc 289  Q
    ||||||||||||||||||||    |||||||||||||| |  |||||||||||||||||||    
T  41455443 ctgaactaaggaattatccgcagaattgcgcaactcccccaaagtacaacaggttcatctc 41455503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 162 - 289
Target Start/End: Original strand, 41451688 - 41451820
Alignment:
Q  162 gcggatgattgaaggatcacaacctgcaaaacaagataatgaaacataaaaccagaggcgtgacaatgtcactgaactaaggaattatccg----attgc 257  Q
    |||||||| |||||||||| |||||||||||||||| ||| |||  ||||||  |||||||||| |||||||| |||||||||||||||||    ||||     
T  41451688 gcggatgactgaaggatcataacctgcaaaacaagaaaataaaaagtaaaacatgaggcgtgactatgtcactaaactaaggaattatccgcagaattgt 41451787  T
Q  258 gcaact-ccctcggagtacaacaggttcatctc 289  Q
    |||||| ||| | ||||||||||||||||||||    
T  41451788 gcaactccccccagagtacaacaggttcatctc 41451820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 162 - 289
Target Start/End: Complemental strand, 32355370 - 32355239
Alignment:
Q  162 gcggatgattgaaggatcacaacctgcaaaacaagataatgaaacataaaaccagaggcgtgacaatgtcactgaactaaggaattatccg----attgc 257  Q
    |||||||| |||||||||| |||||||||||||||| ||| |||  ||||||| ||||||||||||| ||||||||||||| |||||| ||    ||| |    
T  32355370 gcggatgactgaaggatcataacctgcaaaacaagaaaataaaaagtaaaacctgaggcgtgacaatatcactgaactaagaaattattcgcagaattac 32355271  T
Q  258 gcaactccctcggagtacaacaggttcatctc 289  Q
    |||||| |  | ||||||||||||||||||||    
T  32355270 gcaacttctccagagtacaacaggttcatctc 32355239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 162 - 289
Target Start/End: Complemental strand, 8103 - 7972
Alignment:
Q  162 gcggatgattgaaggatcacaacctgcaaaacaagataatgaaacataaaaccagaggcgtgacaatgtcactgaactaaggaattatccg----attgc 257  Q
    ||||||||  ||||||||| |||||||||||||||| ||| |||  ||||||| |||| ||||| ||||||||||||||||||||||||||    |||||    
T  8103 gcggatgacggaaggatcataacctgcaaaacaagaaaataaaaagtaaaacctgaggtgtgactatgtcactgaactaaggaattatccgcaaaattgc 8004  T
Q  258 gcaactccctcggagtacaacaggttcatctc 289  Q
    ||||||||| | ||||||||||||||||||||    
T  8003 gcaactcccccagagtacaacaggttcatctc 7972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 153 - 289
Target Start/End: Complemental strand, 40254998 - 40254861
Alignment:
Q  153 ttgttgttcgcggatgattgaaggatcacaacctgcaaaacaagataatgaaacataaaaccagaggcgtgacaatgtcactgaactaaggaattatcc- 251  Q
    ||||||||||||||||| ||||||||||||||||| |||| || | ||| |||| ||||||   ||||||||| |||||||||||||||||||||||||     
T  40254998 ttgttgttcgcggatgactgaaggatcacaacctgtaaaataataaaataaaacgtaaaac---aggcgtgactatgtcactgaactaaggaattatcca 40254902  T
Q  252 ---gattgcgcaactccctcggagtacaacaggttcatctc 289  Q
        |||||||||||||  |  |||||||||||||||||||    
T  40254901 cagaattgcgcaactcctccatagtacaacaggttcatctc 40254861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 117 - 282
Target Start/End: Complemental strand, 26050185 - 26050014
Alignment:
Q  117 cattgtcataatcgtctccagccataattcattagattgttgttcgcggatgattgaaggatcacaacctgcaaaacaagataat-gaaacataaaa-cc 214  Q
    |||||||| |||  |||||||||||||||| |||||||||||   |||||||| ||||| ||||||||||||||||||  | | |  |||  ||||| ||    
T  26050185 cattgtcaaaattttctccagccataattccttagattgttgaaagcggatgactgaagtatcacaacctgcaaaacagtaaactaaaaaggtaaaaccc 26050086  T
Q  215 agaggcgtgacaatgtcactgaactaaggaattatccg----attgcgcaactccctcggagtacaacaggt 282  Q
     |||||||||| | ||||||| ||||||||||||||||    |||||||||||||| | || ||||||||||    
T  26050085 tgaggcgtgactaagtcactggactaaggaattatccgcagaattgcgcaactcccccagaatacaacaggt 26050014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 282
Target Start/End: Complemental strand, 26053498 - 26053428
Alignment:
Q  216 gaggcgtgacaatgtcactgaactaaggaattatccg----attgcgcaactccctcggagtacaacaggt 282  Q
    |||||||||| | ||||||| ||||||||||||||||    |||||||||||||| | || ||||||||||    
T  26053498 gaggcgtgactaagtcactggactaaggaattatccgtagaattgcgcaactcccccagaatacaacaggt 26053428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 117 - 282
Target Start/End: Complemental strand, 27075152 - 27074981
Alignment:
Q  117 cattgtcataatcgtctccagccataattcattagattgttgttcgcggatgattgaaggatcacaacctgcaaaacaagataat-gaaacataaaa-cc 214  Q
    |||||||| |||  |||||||||||||||| |||||||||||   |||||||| ||||| ||||||||||||||||||| | | |  |||  ||||| ||    
T  27075152 cattgtcagaattttctccagccataattccttagattgttgaatgcggatgactgaagtatcacaacctgcaaaacaataaactaaaaaggtaaaaccc 27075053  T
Q  215 agaggcgtgacaatgtcactgaactaaggaattatccg----attgcgcaactccctcggagtacaacaggt 282  Q
     |||||||||| | ||||||| ||||||||||||||||    |||||||||||||| | || ||||||||||    
T  27075052 tgaggcgtgactaagtcactggactaaggaattatccgcagaattgcgcaactcccccagaatacaacaggt 27074981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 162 - 289
Target Start/End: Original strand, 28703673 - 28703804
Alignment:
Q  162 gcggatgattgaaggatcacaacctgcaaaacaagataatgaaacataaaaccagaggcgtgacaatgtcactgaactaaggaattatccg----attgc 257  Q
    |||||||| |||||||||| |||||||||||||||| ||| |||  |||||   ||||| |||  ||||||||||||||||||||||||||    |||||    
T  28703673 gcggatgagtgaaggatcataacctgcaaaacaagaaaataaaaagtaaaatttgaggcatgattatgtcactgaactaaggaattatccgcagaattgc 28703772  T
Q  258 gcaactccctcggagtacaacaggttcatctc 289  Q
    ||||||||| |  ||||||||| |||||||||    
T  28703773 gcaactcccccaaagtacaacaagttcatctc 28703804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 148 - 225
Target Start/End: Complemental strand, 32893794 - 32893717
Alignment:
Q  148 ttagattgttgttcgcggatgattgaaggatcacaacctgcaaaacaagataatgaaacataaaaccagaggcgtgac 225  Q
    ||||||||||||| |||||||| |||||||||| |||||||||||||||| ||| | |  ||||||| ||||||||||    
T  32893794 ttagattgttgtttgcggatgactgaaggatcataacctgcaaaacaagaaaataacaagtaaaacctgaggcgtgac 32893717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 249
Target Start/End: Original strand, 36611911 - 36612044
Alignment:
Q  117 cattgtcataatcgtctccagccataattcattagattgttgttcgcggatgattgaaggatcacaacctgcaaaacaagataatgaaacataaaaccag 216  Q
    |||||| | |||| |||||| ||||||||| ||||||||  |   || ||||| ||||||||||||||||||||||||| | |||||||| ||||| |      
T  36611911 cattgttagaatcatctccatccataattccttagattgcggaaggcagatgactgaaggatcacaacctgcaaaacaataaaatgaaacgtaaaatcta 36612010  T
Q  217 aggcgtgac-aatgtcactgaactaaggaattat 249  Q
    ||||||||| |  ||||||| |||||| ||||||    
T  36612011 aggcgtgactaccgtcactggactaagaaattat 36612044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 289
Target Start/End: Original strand, 32893810 - 32893846
Alignment:
Q  253 attgcgcaactccctcggagtacaacaggttcatctc 289  Q
    |||||||||||||| | ||||||||||||||||||||    
T  32893810 attgcgcaactcccccagagtacaacaggttcatctc 32893846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 5 times since January 2019
Visitors: 3832