View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0622_low_97 (Length: 293)
Name: NF0622_low_97
Description: NF0622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0622_low_97 |
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Alignment Details
Target: chr5 (Bit Score: 121; Significance: 5e-62; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 2 - 150
Target Start/End: Complemental strand, 26685429 - 26685281
Alignment:
| Q |
2 |
ttgtcaccaaaattatcttcaattatatatacaaatatcattactctaagaaatatgacgtctaacaaaagtgtaatacaatcgcctcacttgtagcctc |
101 |
Q |
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|||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||| |
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| T |
26685429 |
ttgtcaccaaaattgtcttcaattagatatacaaatatcattactctaagaaacatgaggtctaacaaaagtgtaagacaatcgcctcacttgtagcctc |
26685330 |
T |
|
| Q |
102 |
cttagaacgagccaatctccaaaagattgtcgatagtgaatccttaccc |
150 |
Q |
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|||||||| |||||||||||||||||||||| ||||||||||||||||| |
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| T |
26685329 |
cttagaacaagccaatctccaaaagattgtccatagtgaatccttaccc |
26685281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 2 - 150
Target Start/End: Complemental strand, 26955159 - 26955011
Alignment:
| Q |
2 |
ttgtcaccaaaattatcttcaattatatatacaaatatcattactctaagaaatatgacgtctaacaaaagtgtaatacaatcgcctcacttgtagcctc |
101 |
Q |
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|||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||| |
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| T |
26955159 |
ttgtcaccaaaattgtcttcaattagatatacaaatatcattactctaagaaacatgaggtctaacaaaagtgtaagacaatcgcctcacttgtagcctc |
26955060 |
T |
|
| Q |
102 |
cttagaacgagccaatctccaaaagattgtcgatagtgaatccttaccc |
150 |
Q |
| |
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|||||||| |||||||||||||||||||||| ||||||||||||||||| |
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| T |
26955059 |
cttagaacaagccaatctccaaaagattgtccatagtgaatccttaccc |
26955011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 48
Target Start/End: Complemental strand, 3154576 - 3154530
Alignment:
| Q |
2 |
ttgtcaccaaaattatcttcaattatatatacaaatatcattactct |
48 |
Q |
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|||||||||||||| || ||||||| || |||||||||||||||||| |
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| T |
3154576 |
ttgtcaccaaaattgtcatcaattaaatgtacaaatatcattactct |
3154530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 372653 - 372605
Alignment:
| Q |
2 |
ttgtcaccaaaattatcttcaattatatatacaaatatcattactctaa |
50 |
Q |
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||||||||||||||||| |||||| || ||||||||||| |||||||| |
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| T |
372653 |
ttgtcaccaaaattatcatcaattggatgtacaaatatcactactctaa |
372605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 259
Target Start/End: Complemental strand, 26685174 - 26685146
Alignment:
| Q |
231 |
aggtcttcatttcaactagattcatataa |
259 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
26685174 |
aggtcttcatttcaactagattcatataa |
26685146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 259
Target Start/End: Complemental strand, 26954904 - 26954876
Alignment:
| Q |
231 |
aggtcttcatttcaactagattcatataa |
259 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
26954904 |
aggtcttcatttcaactagattcatataa |
26954876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 43255501 - 43255454
Alignment:
| Q |
1 |
attgtcaccaaaattatcttcaattatatatacaaatatcattactct |
48 |
Q |
| |
|
|||||||||||||||||| ||||||| || |||||||||||||||||| |
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|
| T |
43255501 |
attgtcaccaaaattatcatcaattagatgtacaaatatcattactct |
43255454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 25614754 - 25614709
Alignment:
| Q |
2 |
ttgtcaccaaaattatcttcaattatatatacaaatatcattactc |
47 |
Q |
| |
|
|||||||||||||| || ||||||| || ||||||||||||||||| |
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| T |
25614754 |
ttgtcaccaaaattgtcatcaattagatgtacaaatatcattactc |
25614709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 41495151 - 41495190
Alignment:
| Q |
2 |
ttgtcaccaaaattatcttcaattatatatacaaatatca |
41 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||||||||| |
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|
| T |
41495151 |
ttgtcaccaaaattatcatcaattagatatacaaatatca |
41495190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 32901466 - 32901514
Alignment:
| Q |
1 |
attgtcaccaaaattatcttcaattatatatacaaatatcattactcta |
49 |
Q |
| |
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|||||||||||||||||| |||||| || ||||||||||| ||||||| |
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| T |
32901466 |
attgtcaccaaaattatcatcaattggatgtacaaatatcactactcta |
32901514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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