View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0622_low_98 (Length: 292)
Name: NF0622_low_98
Description: NF0622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0622_low_98 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] chr3 (1 HSPs) |
| |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 91 - 292
Target Start/End: Original strand, 4256636 - 4256837
Alignment:
| Q |
91 |
tatatagatgttattattgattaagaagtatgaatgagggaaaaatattttttaagaagaatgaattcaaacctgaaatgctaatcgaaccaccgaaaaa |
190 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
4256636 |
tatatagatgttattattgattaagaagtatgaatgaggcaaaaataatttataagaagaatgaattaaaacctgaaatgctaatcgaaccaccgaaaaa |
4256735 |
T |
|
| Q |
191 |
acctcaattgggtcagtttgaagcatcgttataatttgttgtgcattcatttttctttggcaattttgagttgatgaatggtatgatattgcattcacta |
290 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4256736 |
acctcaattggatcagtttgaagtttcgttataatttgttgtgcattcatttttctctggcaattttgagttgatgaatggtatgatattgcattcacta |
4256835 |
T |
|
| Q |
291 |
ct |
292 |
Q |
| |
|
|| |
|
|
| T |
4256836 |
ct |
4256837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 91 - 292
Target Start/End: Original strand, 21899606 - 21899807
Alignment:
| Q |
91 |
tatatagatgttattattgattaagaagtatgaatgagggaaaaatattttttaagaagaatgaattcaaacctgaaatgctaatcgaaccaccgaaaaa |
190 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
21899606 |
tatatagatgttattattgattaagaagtatgaatgaggcaaaaataatttataagaagaatgaattaaaacctgaaatgctaatcgaaccaccgaaaaa |
21899705 |
T |
|
| Q |
191 |
acctcaattgggtcagtttgaagcatcgttataatttgttgtgcattcatttttctttggcaattttgagttgatgaatggtatgatattgcattcacta |
290 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21899706 |
acctcaattggatcagtttgaagtttcgttataatttgttgtgcattcatttttctctggcaattttgagttgatgaatggtatgatattgcattcacta |
21899805 |
T |
|
| Q |
291 |
ct |
292 |
Q |
| |
|
|| |
|
|
| T |
21899806 |
ct |
21899807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 166; Significance: 7e-89; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 91 - 292
Target Start/End: Original strand, 20533208 - 20533409
Alignment:
| Q |
91 |
tatatagatgttattattgattaagaagtatgaatgagggaaaaatattttttaagaagaatgaattcaaacctgaaatgctaatcgaaccaccgaaaaa |
190 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||| ||| ||||||||||||||||||||| |||||| |
|
|
| T |
20533208 |
tatatagatgttattattgattaagaagtatgaatgaggcaaaaataatttttaagaagaattaattaaaatctgaaatgctaatcgaaccactgaaaaa |
20533307 |
T |
|
| Q |
191 |
acctcaattgggtcagtttgaagcatcgttataatttgttgtgcattcatttttctttggcaattttgagttgatgaatggtatgatattgcattcacta |
290 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
20533308 |
acctcaattgggtcagtttgaagtttcgttataatttgttgtgcattcatttttctttggcaattttgagttgatgaattgtatgatattgcattcacta |
20533407 |
T |
|
| Q |
291 |
ct |
292 |
Q |
| |
|
|| |
|
|
| T |
20533408 |
ct |
20533409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2618 times since January 2019
Visitors: 3822