View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0623_low_1 (Length: 864)
Name: NF0623_low_1
Description: NF0623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0623_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 349; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 406 - 841
Target Start/End: Complemental strand, 33016229 - 33015794
Alignment:
| Q |
406 |
caagatccaacagatctaacccttctgagatcttccaaggaagagaaggtgaattcatagaataccttgccaatagaagtgattccccgtttaccaagag |
505 |
Q |
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| T |
33016229 |
caagatccaacatatctaacccttctaagatcctccaaggaagagaaggtgaattcatagaataccttgccaatagaaatgattccccgtttaccaagag |
33016130 |
T |
|
| Q |
506 |
atttccctaaaaccatcagcttggagcgcaagttatccatagtaaaaggtgatgacccttttggccatatcatcattacatgcaagttgtgtttacactc |
605 |
Q |
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| T |
33016129 |
atttccctataaccatcagcttggagcgcaagttatccatagtaaaaggtgatgacccttttggccatatcattattacatgcaagttgtgtttacactc |
33016030 |
T |
|
| Q |
606 |
atccaagccagtaatatactcctcttcaggaatatctgttgcgattcatcaccttttttgcatggttgaggtaactaactgattggaacatcacaaacat |
705 |
Q |
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| T |
33016029 |
atccaagccagtaatatactcctcttcaggaatttctgttgcgattcatcaccttttttgcatggatgaggtaactaactgattggaacatcacaaacat |
33015930 |
T |
|
| Q |
706 |
tgctaagagcttgtgcaaacgnnnnnnnnnnnnnnnnnggtcacggtgacagggctggggataacctttgtgttattgttggtggaaattggtggatcgg |
805 |
Q |
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| T |
33015929 |
tgctaagagcttgtgcaaacgtttttttgttgttttttggtcacggtgacagggctagggataacctttgtgttattgttggtggaaattggtggatcgg |
33015830 |
T |
|
| Q |
806 |
tttgagaaacaagctggcatggccaatgtatgatga |
841 |
Q |
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| T |
33015829 |
tttgagaaacaagctggcatggccaatgtatgatga |
33015794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 33017479 - 33017304
Alignment:
| Q |
1 |
catctgaattgtgatccctaaatatccctccacatgttgaattacctggattgccatttgaggatccaacaatattgcatttggtccaattcaattgagg |
100 |
Q |
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| T |
33017479 |
catctgaattgtgatccctaaatatccctccacatgttgaattacctggattgccatttgaggctccatcaatattgcatttagtccaattcaattgagg |
33017380 |
T |
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| Q |
101 |
aggatcccatagaatttctttgatcactggtgctttaggatgatggataatgcatttaaaagctttaagaattgtg |
176 |
Q |
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| T |
33017379 |
aggatcccatagaatttctttgatcactggtgctttaggatgatggataatgcatttaaaagctttaagaattgtg |
33017304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 184 - 395
Target Start/End: Complemental strand, 33016577 - 33016377
Alignment:
| Q |
184 |
ttgaattattagcgaattttggtttacccc-gttaaaaaagttggattccaaccctgtaatcatagttttaaaaaccagaccagtgaacgaaccagtgaa |
282 |
Q |
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| T |
33016577 |
ttgaaatattagcgaattttgatttacccccgttaaaaaagttggattccaaccctgtaatcatagttttaaaaaccagactagtgaa------------ |
33016490 |
T |
|
| Q |
283 |
ggtgatgggtcattggatcaatggtcgaaccgtgtgactgaatcagattaaactgattgactcggtctctataaaataaatgttatgtnnnnnnnctgaa |
382 |
Q |
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|||||||| ||| ||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
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| T |
33016489 |
ggtgatggatcactgggtcaatggtcgaaccgtgtcattgaatcagattaaactgattgactcggtctctaaaaaataaatgttatgtacaaaaactgaa |
33016390 |
T |
|
| Q |
383 |
ttaaaccagatga |
395 |
Q |
| |
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||||||||||||| |
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| T |
33016389 |
ttaaaccagatga |
33016377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 9e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 508 - 696
Target Start/End: Complemental strand, 16179853 - 16179665
Alignment:
| Q |
508 |
ttccctaaaaccatcagcttggagcgcaagttatccatagtaaaaggtgatgacccttttggccatatcatcattacatgcaagttgtgtttacactcat |
607 |
Q |
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|||| ||| ||| ||| ||||| ||||| | |||| || |||| ||||| ||||||||| |||||||| || | ||||||| ||||| |||||||| | |
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| T |
16179853 |
ttccataagaccttcaacttggcgcgcatgctatctatggtaacaggtg-tgaccctttaggccatattattctcccatgcaaattgtggttacactctt |
16179755 |
T |
|
| Q |
608 |
ccaagccagtaatatactcctcttcaggaatatctgttgcgatt-catcaccttttttgcatggttgaggtaactaactgattggaacat |
696 |
Q |
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| || |||| ||||||||| ||||||||||| || |||| ||| |||| ||||| |||||||| |||||||| | |||||||||||||| |
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| T |
16179754 |
ctaatccagcaatatactcatcttcaggaatttcaattgcaattccatctcctttcttgcatggctgaggtaattgactgattggaacat |
16179665 |
T |
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