View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0623_low_3 (Length: 389)

Name: NF0623_low_3
Description: NF0623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0623_low_3
NF0623_low_3
[»] chr4 (1 HSPs)
chr4 (235-340)||(30052505-30052613)
[»] chr3 (4 HSPs)
chr3 (154-232)||(12821623-12821700)
chr3 (154-232)||(12827265-12827342)
chr3 (169-229)||(43808780-43808840)
chr3 (198-229)||(9460583-9460614)
[»] chr1 (2 HSPs)
chr1 (154-230)||(38505952-38506028)
chr1 (169-230)||(22370295-22370356)
[»] chr6 (1 HSPs)
chr6 (154-230)||(34704050-34704126)
[»] chr7 (4 HSPs)
chr7 (169-225)||(39266853-39266909)
chr7 (173-225)||(48846903-48846955)
chr7 (168-225)||(23487194-23487252)
chr7 (184-225)||(23485683-23485724)
[»] chr2 (4 HSPs)
chr2 (168-223)||(4814730-4814785)
chr2 (169-231)||(41579248-41579310)
chr2 (195-229)||(28000670-28000704)
chr2 (169-229)||(16965141-16965201)


Alignment Details
Target: chr4 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 235 - 340
Target Start/End: Original strand, 30052505 - 30052613
Alignment:
Q  235 atacaagttgtgtggacaaggtcaagctaaagatatttcctctaagcacatggggaaccattaggtg---ttacttccaatgtatgcagctgagcggaga 331  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||   |||||||||||||||| |||||||||||||    
T  30052505 atacaagttctgtggacaaggtcaagctaaagatatttcctctaagcacatagggaaccattaggtgttattacttccaatgtatgtagctgagcggaga 30052604  T
Q  332 gctacttac 340  Q
    |||||||||    
T  30052605 gctacttac 30052613  T

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Target: chr3 (Bit Score: 59; Significance: 7e-25; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 154 - 232
Target Start/End: Original strand, 12821623 - 12821700
Alignment:
Q  154 aattaaggcaagataattagagggaaaatctaggttaacttatagcatgacctaataagcatttagaataagggataag 232  Q
    |||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||    
T  12821623 aattaaggtaagataattagagggaaaatctaggttaacttataacat-acctaataagcatttagaataagagataag 12821700  T

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Target: chr3; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 154 - 232
Target Start/End: Original strand, 12827265 - 12827342
Alignment:
Q  154 aattaaggcaagataattagagggaaaatctaggttaacttatagcatgacctaataagcatttagaataagggataag 232  Q
    |||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||    
T  12827265 aattaaggtaagataattagagggaaaatctaggttaacttataacat-acctaataagcatttagaataagagataag 12827342  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 229
Target Start/End: Original strand, 43808780 - 43808840
Alignment:
Q  169 attagagggaaaatctaggttaacttatagcatgacctaataagcatttagaataagggat 229  Q
    |||||||||||||  |||| | | | |||||||||||||||||||||||||| ||||||||    
T  43808780 attagagggaaaaattagggttaatgatagcatgacctaataagcatttagagtaagggat 43808840  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 198 - 229
Target Start/End: Complemental strand, 9460614 - 9460583
Alignment:
Q  198 gcatgacctaataagcatttagaataagggat 229  Q
    ||||||||||||||||||||||||||||||||    
T  9460614 gcatgacctaataagcatttagaataagggat 9460583  T

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Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 154 - 230
Target Start/End: Complemental strand, 38506028 - 38505952
Alignment:
Q  154 aattaaggcaagataattagagggaaaatctaggttaacttatagcatgacctaataagcatttagaataagggata 230  Q
    |||||| ||||||| |||||||||||||| |||||||| |  |||||||||||||||||||||||||||||||||||    
T  38506028 aattaatgcaagattattagagggaaaatttaggttaagtggtagcatgacctaataagcatttagaataagggata 38505952  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 230
Target Start/End: Complemental strand, 22370356 - 22370295
Alignment:
Q  169 attagagggaaaatctaggttaacttatagcatgacctaataagcatttagaataagggata 230  Q
    |||||||||||||  |||| | | | |||| ||||||||||||||||||||| |||||||||    
T  22370356 attagagggaaaaattagggttaatgatagtatgacctaataagcatttagagtaagggata 22370295  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 154 - 230
Target Start/End: Complemental strand, 34704126 - 34704050
Alignment:
Q  154 aattaaggcaagataattagagggaaaatctaggttaacttatagcatgacctaataagcatttagaataagggata 230  Q
    |||||| || ||||||||||||||||||  |||||| | |  ||||| |||||||||||||||||||||||||||||    
T  34704126 aattaatgctagataattagagggaaaaattaggtttagtagtagcaagacctaataagcatttagaataagggata 34704050  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 169 - 225
Target Start/End: Original strand, 39266853 - 39266909
Alignment:
Q  169 attagagggaaaatctaggttaacttatagcatgacctaataagcatttagaataag 225  Q
    |||||||||||||  |||||||| | |||||| ||||||||||||||||||||||||    
T  39266853 attagagggaaaaattaggttaaatgatagcaagacctaataagcatttagaataag 39266909  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 48846903 - 48846955
Alignment:
Q  173 gagggaaaatctaggttaacttatagcatgacctaataagcatttagaataag 225  Q
    |||||||||  ||||||||  ||||||| ||||||||||||||||||||||||    
T  48846903 gagggaaaaattaggttaaactatagcaagacctaataagcatttagaataag 48846955  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 23487252 - 23487194
Alignment:
Q  168 aattagagggaaaatct-aggttaacttatagcatgacctaataagcatttagaataag 225  Q
    ||||||||||||||  | ||||||||| ||||||||||||||||||| || ||||||||    
T  23487252 aattagagggaaaaaattaggttaactaatagcatgacctaataagctttaagaataag 23487194  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 225
Target Start/End: Complemental strand, 23485724 - 23485683
Alignment:
Q  184 taggttaacttatagcatgacctaataagcatttagaataag 225  Q
    |||||||||| ||||||||||||||||||| || ||||||||    
T  23485724 taggttaactaatagcatgacctaataagctttaagaataag 23485683  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 168 - 223
Target Start/End: Complemental strand, 4814785 - 4814730
Alignment:
Q  168 aattagagggaaaatctaggttaacttatagcatgacctaataagcatttagaata 223  Q
    ||||||||||||||  |||||||||| ||||||||||||||||||| || ||||||    
T  4814785 aattagagggaaaaattaggttaactaatagcatgacctaataagctttaagaata 4814730  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 231
Target Start/End: Complemental strand, 41579310 - 41579248
Alignment:
Q  169 attagagggaaaatctaggttaacttatagcatgacctaataagcatttagaataagggataa 231  Q
    |||||||||||||  |||| | | | |||||||||||||||||||||||||| ||||||||||    
T  41579310 attagagggaaaaattagggttaatgatagcatgacctaataagcatttagagtaagggataa 41579248  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 229
Target Start/End: Complemental strand, 28000704 - 28000670
Alignment:
Q  195 atagcatgacctaataagcatttagaataagggat 229  Q
    |||||||||||||| ||||||||||||||||||||    
T  28000704 atagcatgacctaacaagcatttagaataagggat 28000670  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 229
Target Start/End: Complemental strand, 16965201 - 16965141
Alignment:
Q  169 attagagggaaaatctaggttaacttatagcatgacctaataagcatttagaataagggat 229  Q
    ||||||| |||||  |||||| | ||||| ||| |||||||||||||||||| ||||||||    
T  16965201 attagagagaaaaattaggtttagttataacatcacctaataagcatttagagtaagggat 16965141  T

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