View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0623_low_5 (Length: 303)
Name: NF0623_low_5
Description: NF0623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0623_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-147; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 45273843 - 45273553
Alignment:
| Q |
1 |
ccatggaagtatttagcaaagactgtcgtcatggaatccaccattggtgatttcattcattcagatggatggaccatttggcaaggagaacaaaatcaca |
100 |
Q |
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| T |
45273843 |
ccatggaagtatttagcaaagactgtcgtcatggaatccaccattggtgatttcattcatccagatggatggaccatttggcaaggagaacaaaatcaca |
45273744 |
T |
|
| Q |
101 |
acacatgttactatgcagagtatgccaacactggacctggtgccaatgttgctaggagggtcaagtggaggggttatcacggtgtcattagcagggccga |
200 |
Q |
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||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
45273743 |
acacatgttactatgcagagtatgcaaacaccggacctggtgccaatgttgcgaggagggtcaagtggaagggttatcacggtgtcattagcagggccga |
45273644 |
T |
|
| Q |
201 |
ggctaccaaattcaccgctggtatatggctccaagctggacccaagtctgcagctgaatggttgaatggtcttcatgttcctcactacctt |
291 |
Q |
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| T |
45273643 |
ggctaacaaattcacagctggtatatggctccaagctggacccaagtctgcagctgaatggttgaatggtcttcatgttcctcactacctt |
45273553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 45282087 - 45281797
Alignment:
| Q |
1 |
ccatggaagtatttagcaaagactgtcgtcatggaatccaccattggtgatttcattcattcagatggatggaccatttggcaaggagaacaaaatcaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
45282087 |
ccatggaagtatttagcaaagactgtcgtcatggaatccaccattggtgatttcattcatccagatggatggaccatttggcaaggagaacaaaatcaca |
45281988 |
T |
|
| Q |
101 |
acacatgttactatgcagagtatgccaacactggacctggtgccaatgttgctaggagggtcaagtggaggggttatcacggtgtcattagcagggccga |
200 |
Q |
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| T |
45281987 |
acacatgttactatgcagagtatgcaaacaccggacctggtgccaatgttgcgaggagggtcaagtggaagggttatcacggtgtcattagcagggccga |
45281888 |
T |
|
| Q |
201 |
ggctaccaaattcaccgctggtatatggctccaagctggacccaagtctgcagctgaatggttgaatggtcttcatgttcctcactacctt |
291 |
Q |
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||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45281887 |
ggctaacaaattcacagctggtatatggctccaagctggacccaagtctgcagctgaatggttgaatggtcttcatgttcctcactacctt |
45281797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 45293427 - 45293137
Alignment:
| Q |
1 |
ccatggaagtatttagcaaagactgtcgtcatggaatccaccattggtgatttcattcattcagatggatggaccatttggcaaggagaacaaaatcaca |
100 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||||| | | | |
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| T |
45293427 |
ccatggaaggttttagcaaagacggtcgtcatggaatccaccattggtgattttattcatccagatggatggaccccttggcaaggagaacattttgaaa |
45293328 |
T |
|
| Q |
101 |
acacatgttactatgcagagtatgccaacactggacctggtgccaatgttgctaggagggtcaagtggaggggttatcacggtgtcattagcagggccga |
200 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||| ||||||||| |||||||||||||| ||||||||||||||| |
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| T |
45293327 |
acacatgttactatgcagagtacgccaacactggacctggtgccaatattgccaggaggatcaagtggaagggttatcacggtgccattagcagggccga |
45293228 |
T |
|
| Q |
201 |
ggctaccaaattcaccgctggtatatggctccaagctggacccaagtctgcagctgaatggttgaatggtcttcatgttcctcactacctt |
291 |
Q |
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||||||||||||||| |||||| ||||||||||||||||||||||||| ||||| |||||||||| ||||||| |||||||| | |||||| |
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| T |
45293227 |
ggctaccaaattcactgctggtttatggctccaagctggacccaagtccgcagccgaatggttgactggtcttaatgttcctaattacctt |
45293137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 45302387 - 45302097
Alignment:
| Q |
1 |
ccatggaagtatttagcaaagactgtcgtcatggaatccaccattggtgatttcattcattcagatggatggaccatttggcaaggagaacaaaatcaca |
100 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||||| | | | |
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| T |
45302387 |
ccatggaaggttttagcaaagacggtcgtcatggaatccaccattggtgattttattcatccagatggatggaccccttggcaaggagaacattttgaaa |
45302288 |
T |
|
| Q |
101 |
acacatgttactatgcagagtatgccaacactggacctggtgccaatgttgctaggagggtcaagtggaggggttatcacggtgtcattagcagggccga |
200 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||| ||||||||| |||||||||||||| ||||||||||||||| |
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| T |
45302287 |
acacatgttactatgcagagtacgccaacactggacctggtgccaatattgccaggaggatcaagtggaagggttatcacggtgccattagcagggccga |
45302188 |
T |
|
| Q |
201 |
ggctaccaaattcaccgctggtatatggctccaagctggacccaagtctgcagctgaatggttgaatggtcttcatgttcctcactacctt |
291 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||||||||||||||| ||||| |||||||||| ||||||| |||||||| | |||||| |
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| T |
45302187 |
ggctaccaaattcactgctggtttatggctccaagctggacccaagtccgcagccgaatggttgactggtcttaatgttcctaattacctt |
45302097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 100 - 291
Target Start/End: Complemental strand, 45270194 - 45269991
Alignment:
| Q |
100 |
aacacatgttactatgcagagtatgccaacactggacctggtgccaatgttgctaggagggtcaagtggaggggttatcacggtgtcattagcagggccg |
199 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| | ||||||||||||||| || |
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| T |
45270194 |
aacacgtgttactttgcagagtatgccaacactggacctggtgccaatgttgcgaggagggtcaagtggaagggttataagggtgtcattagcaggagcg |
45270095 |
T |
|
| Q |
200 |
aggctaccaaattcaccgctggtatatggctccaagctgg------------acccaagtctgcagctgaatggttgaatggtcttcatgttcctcacta |
287 |
Q |
| |
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|||||||||||| |||||| ||||||||||| | ||||| |||||||||||||| |||||||||| | | |||||||||||||||||| |
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| T |
45270094 |
aggctaccaaatacaccgccagtatatggctcgatgctggaccgaagactgcacccaagtctgcagttgaatggttgcacgatcttcatgttcctcacta |
45269995 |
T |
|
| Q |
288 |
cctt |
291 |
Q |
| |
|
|||| |
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|
| T |
45269994 |
cctt |
45269991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 29 - 95
Target Start/End: Complemental strand, 45270283 - 45270217
Alignment:
| Q |
29 |
tcatggaatccaccattggtgatttcattcattcagatggatggaccatttggcaaggagaacaaaa |
95 |
Q |
| |
|
||||||||||||| ||||||||||| |||||| |||||||||||||| ||||| || ||||||||| |
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| T |
45270283 |
tcatggaatccacaattggtgattttattcatcaagatggatggaccacttggccagaagaacaaaa |
45270217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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