View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0623_low_6 (Length: 299)

Name: NF0623_low_6
Description: NF0623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0623_low_6
NF0623_low_6
[»] chr8 (11 HSPs)
chr8 (59-222)||(15114293-15114456)
chr8 (59-220)||(15445090-15445251)
chr8 (64-222)||(15301340-15301498)
chr8 (64-222)||(15481709-15481867)
chr8 (69-222)||(15282819-15282972)
chr8 (69-222)||(15312193-15312346)
chr8 (69-222)||(15463188-15463341)
chr8 (69-222)||(15492562-15492715)
chr8 (73-211)||(15280216-15280350)
chr8 (73-211)||(15460585-15460719)
chr8 (88-204)||(18050840-18050956)


Alignment Details
Target: chr8 (Bit Score: 152; Significance: 2e-80; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 59 - 222
Target Start/End: Original strand, 15114293 - 15114456
Alignment:
Q  59 cacagatgacgaggaaggatccgagttaatggaatgtttctatatgggcatgggagttggatttgcaatcagcttttggattgtttttggttctctttta 158  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15114293 cacaaatgacgaggaatgatccgagttaatggaatgtttctatatgggcatgggagttggatttgcaatcagcttttggattgtttttggttctctttta 15114392  T
Q  159 ctcaagaggacatggagggatgcttacttcaattttctttatgatgtcaaagattggcttatgt 222  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  15114393 ctcaagaggacatggaggcatgcttacttcaattttctttatgatgtcaaagattggcttatgt 15114456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 59 - 220
Target Start/End: Complemental strand, 15445251 - 15445090
Alignment:
Q  59 cacagatgacgaggaaggatccgagttaatggaatgtttctatatgggcatgggagttggatttgcaatcagcttttggattgtttttggttctctttta 158  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||| ||||| ||||||||||||||||||    
T  15445251 cacaaatgacgaggaaggatccgagttaatggaatgtttctatatgggcatgggagttggatttgcaacaggcttctggatagtttttggttctctttta 15445152  T
Q  159 ctcaagaggacatggagggatgcttacttcaattttctttatgatgtcaaagattggcttat 220  Q
     |||||||| |||||||| |||||||||||||||||||||||||||||||||| ||| ||||    
T  15445151 ttcaagaggtcatggaggcatgcttacttcaattttctttatgatgtcaaagactggtttat 15445090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 64 - 222
Target Start/End: Complemental strand, 15301498 - 15301340
Alignment:
Q  64 atgacgaggaaggatccgagttaatggaatgtttctatatgggcatgggagttggatttgcaatcagcttttggattgtttttggttctcttttactcaa 163  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||   |||| ||||| ||||||||| | |||||| | ||    
T  15301498 atgatgaggaaggatccgagctaatggaatgtttctatatgggcatggcagttggattttcaacatgcttctggatagtttttggtacccttttatttaa 15301399  T
Q  164 gaggacatggagggatgcttacttcaattttctttatgatgtcaaagattggcttatgt 222  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||    
T  15301398 gaggacatggaggcatgcttacttcaattttctttatgatgtcaaagactggtttatgt 15301340  T

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Target: chr8; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 64 - 222
Target Start/End: Complemental strand, 15481867 - 15481709
Alignment:
Q  64 atgacgaggaaggatccgagttaatggaatgtttctatatgggcatgggagttggatttgcaatcagcttttggattgtttttggttctcttttactcaa 163  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||   |||| ||||| ||||||||| | |||||| | ||    
T  15481867 atgatgaggaaggatccgagctaatggaatgtttctatatgggcatggcagttggattttcaacatgcttctggatagtttttggtacccttttatttaa 15481768  T
Q  164 gaggacatggagggatgcttacttcaattttctttatgatgtcaaagattggcttatgt 222  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||    
T  15481767 gaggacatggaggcatgcttacttcaattttctttatgatgtcaaagactggtttatgt 15481709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 69 - 222
Target Start/End: Complemental strand, 15282972 - 15282819
Alignment:
Q  69 gaggaaggatccgagttaatggaatgtttctatatgggcatgggagttggatttgcaatcagcttttggattgtttttggttctcttttactcaagagga 168  Q
    ||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||   |||| ||||| ||||||||| | |||||| | |||||||    
T  15282972 gaggaaggatctgagctaatggaatgtttctatatgggcatgggagttggatttacaacaggcttctggatagtttttggtacccttttatttaagagga 15282873  T
Q  169 catggagggatgcttacttcaattttctttatgatgtcaaagattggcttatgt 222  Q
    |||||||| |||||||||||||||||||||||||||| ||||| ||| ||||||    
T  15282872 catggaggcatgcttacttcaattttctttatgatgtgaaagactggtttatgt 15282819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 69 - 222
Target Start/End: Complemental strand, 15312346 - 15312193
Alignment:
Q  69 gaggaaggatccgagttaatggaatgtttctatatgggcatgggagttggatttgcaatcagcttttggattgtttttggttctcttttactcaagagga 168  Q
    ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||   |||| ||| | |||||||||||||||||| ||||||||     
T  15312346 gaggaaggatccgagctaatggaatgtttctatatgggtatgggagttggatttgcaacaggcttctgggtagtttttggttctcttttattcaagaggt 15312247  T
Q  169 catggagggatgcttacttcaattttctttatgatgtcaaagattggcttatgt 222  Q
    |||||||  |||||||||||||||| ||||||||||| ||||| ||| ||||||    
T  15312246 catggagacatgcttacttcaatttcctttatgatgtgaaagactggtttatgt 15312193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 69 - 222
Target Start/End: Complemental strand, 15463341 - 15463188
Alignment:
Q  69 gaggaaggatccgagttaatggaatgtttctatatgggcatgggagttggatttgcaatcagcttttggattgtttttggttctcttttactcaagagga 168  Q
    ||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||   |||| ||||| ||||||||| | |||||| | |||||||    
T  15463341 gaggaaggatctgagctaatggaatgtttctatatgggcatgggagttggatttacaacaggcttctggatagtttttggtacccttttatttaagagga 15463242  T
Q  169 catggagggatgcttacttcaattttctttatgatgtcaaagattggcttatgt 222  Q
    |||||||| |||||||||||||||||||||||||||| ||||| ||| ||||||    
T  15463241 catggaggcatgcttacttcaattttctttatgatgtgaaagactggtttatgt 15463188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 69 - 222
Target Start/End: Complemental strand, 15492715 - 15492562
Alignment:
Q  69 gaggaaggatccgagttaatggaatgtttctatatgggcatgggagttggatttgcaatcagcttttggattgtttttggttctcttttactcaagagga 168  Q
    ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||   |||| ||| | |||||||||||||||||| ||||||||     
T  15492715 gaggaaggatccgagctaatggaatgtttctatatgggtatgggagttggatttgcaacaggcttctgggtagtttttggttctcttttattcaagaggt 15492616  T
Q  169 catggagggatgcttacttcaattttctttatgatgtcaaagattggcttatgt 222  Q
    |||||||  |||||||||||||||| ||||||||||| ||||| ||| ||||||    
T  15492615 catggagacatgcttacttcaatttcctttatgatgtgaaagactggtttatgt 15492562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 73 - 211
Target Start/End: Complemental strand, 15280350 - 15280216
Alignment:
Q  73 aaggatccgagttaatggaatgtttctatatgggcatgggagttggatttgcaatcagcttttggattgtttttggttctcttttactcaagaggacatg 172  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||   ||||     | |||||||||||||||||| |||| ||| ||||    
T  15280350 aaggatctgagctaatggaatgtttctatatgggcatgggagttggatttgcaacaggctt----ctagtttttggttctcttttattcaacaggtcatg 15280255  T
Q  173 gagggatgcttacttcaattttctttatgatgtcaaaga 211  Q
    || | ||||||||||||||||| | |||||||| |||||    
T  15280254 gaagcatgcttacttcaattttttatatgatgtgaaaga 15280216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 73 - 211
Target Start/End: Complemental strand, 15460719 - 15460585
Alignment:
Q  73 aaggatccgagttaatggaatgtttctatatgggcatgggagttggatttgcaatcagcttttggattgtttttggttctcttttactcaagaggacatg 172  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||   ||||     | |||||||||||||||||| |||| ||| ||||    
T  15460719 aaggatctgagctaatggaatgtttctatatgggcatgggagttggatttgcaacaggctt----ctagtttttggttctcttttattcaacaggtcatg 15460624  T
Q  173 gagggatgcttacttcaattttctttatgatgtcaaaga 211  Q
    || | ||||||||||||||||| | |||||||| |||||    
T  15460623 gaagcatgcttacttcaattttttatatgatgtgaaaga 15460585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 88 - 204
Target Start/End: Complemental strand, 18050956 - 18050840
Alignment:
Q  88 tggaatgtttctatatgggcatgggagttggatttgcaatcagcttttggattgtttttggttctcttttactcaagaggacatggagggatgcttactt 187  Q
    ||||||| || ||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||| ||||  | ||||||||| |   ||||||    
T  18050956 tggaatggttttatatgggcatgggagttggatttgcaatcagcttcttgattgttttttgttctcttttattcaatcgaacatggaggcacaattactt 18050857  T
Q  188 caattttctttatgatg 204  Q
    ||| |||||| ||||||    
T  18050856 caaatttcttgatgatg 18050840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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