View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0623_low_7 (Length: 276)
Name: NF0623_low_7
Description: NF0623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0623_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 9 - 247
Target Start/End: Complemental strand, 41694372 - 41694133
Alignment:
| Q |
9 |
gagatgaaacacgcttctgttctgatcattacagacaaaacgttccttctcttaatccacaaattatgagcaatcctatgagtttgacatgccaaaaaa- |
107 |
Q |
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| T |
41694372 |
gagatgaaacacgcttctgttctgatcattacagacaaaacgttccttctcttaatccacaaattatgagcaatcctatgagtttgacatgccaaaaaaa |
41694273 |
T |
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| Q |
108 |
cctttaaaattcaagaaacagtgctcaacttaaacaatcctatgagttttctgggatacaaaatttctttatcagattccaaaacacgcaaaatttctat |
207 |
Q |
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| T |
41694272 |
cctttaaaattcaagaaacagtgctcaacttaaacaatcctatgagttttctgggatacaaaatttctttatcagattccaaaacacgcaaaatttctat |
41694173 |
T |
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| Q |
208 |
attactatgaagacttacacctctcaatttgacagcaagc |
247 |
Q |
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| T |
41694172 |
attactatgaagacttacacctctcaatttgacagcaagc |
41694133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 65 - 127
Target Start/End: Original strand, 41729484 - 41729546
Alignment:
| Q |
65 |
ccacaaattatgagcaatcctatgagtttgacatgccaaaaaacctttaaaattcaagaaaca |
127 |
Q |
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| T |
41729484 |
ccacaaattatgagctaccctatgagcttgacatgctaaaaatcctttgaaattcaagaaaca |
41729546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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