View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0623_low_8 (Length: 251)

Name: NF0623_low_8
Description: NF0623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0623_low_8
NF0623_low_8
[»] chr2 (29 HSPs)
chr2 (1-238)||(9320599-9320838)
chr2 (1-192)||(9328264-9328455)
chr2 (1-238)||(9315647-9315875)
chr2 (12-211)||(9061456-9061653)
chr2 (1-238)||(12012835-12013051)
chr2 (1-232)||(9284476-9284703)
chr2 (12-223)||(9294937-9295144)
chr2 (112-238)||(11987863-11987989)
chr2 (160-238)||(9291566-9291644)
chr2 (132-238)||(9364245-9364351)
chr2 (5-81)||(7115959-7116035)
chr2 (129-238)||(12019282-12019388)
chr2 (1-93)||(12006404-12006497)
chr2 (1-80)||(9274277-9274356)
chr2 (139-230)||(8573931-8574024)
chr2 (96-200)||(9272313-9272417)
chr2 (101-197)||(10371508-10371604)
chr2 (1-81)||(11987773-11987853)
chr2 (1-66)||(10347552-10347617)
chr2 (1-66)||(8573812-8573877)
chr2 (160-228)||(9274200-9274268)
chr2 (1-66)||(9291713-9291778)
chr2 (1-93)||(12019174-12019267)
chr2 (139-238)||(9066038-9066135)
chr2 (162-238)||(10352738-10352814)
chr2 (1-81)||(10352885-10352965)
chr2 (186-238)||(12006543-12006595)
chr2 (1-64)||(10335649-10335712)
chr2 (112-151)||(12006494-12006533)
[»] scaffold0667 (1 HSPs)
scaffold0667 (1-238)||(4073-4309)
[»] chr3 (2 HSPs)
chr3 (98-238)||(37462098-37462239)
chr3 (1-78)||(37462244-37462321)
[»] chr1 (4 HSPs)
chr1 (101-239)||(29453663-29453800)
chr1 (101-238)||(29443680-29443825)
chr1 (128-238)||(29422941-29423050)
chr1 (92-221)||(29468139-29468273)
[»] chr8 (2 HSPs)
chr8 (134-238)||(41967132-41967236)
chr8 (1-43)||(41966994-41967036)
[»] chr4 (1 HSPs)
chr4 (162-237)||(26574525-26574600)


Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 9320838 - 9320599
Alignment:
Q  1 aagtcttgtcccaccttccttccctgttgataattctaagaagaaggagaatcgtacaagcaagagcatgagaaggtacttgttttgattatg--agttt 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||    
T  9320838 aagtcttgtcccaccttccttccctgttgataattctaagaagaaggagaatcgtacaagcaagagcatgagaaggtacttgttttgattatactagttt 9320739  T
Q  99 tttgagtttttgctatgtataagttgatgtcaattcaatggacccatcatatgatatattaagttaaactctatgctaaaggtcaaattgaatttttatt 198  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  9320738 tttgagtttttgctatgtattagttgatgtcaattcaatggacccatcatatgatatattaagttaaactctatgctataggtcaaattgaatttttatt 9320639  T
Q  199 atcggacaaggatactctaattactttgaagtctctacct 238  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  9320638 atcggacaaggatactctaattactttgaagtctctacct 9320599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 9328455 - 9328264
Alignment:
Q  1 aagtcttgtcccaccttccttccctgttgataattctaagaagaaggagaatcgtacaagcaagagcatgagaaggtacttgttttgattatgagttttt 100  Q
    ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  9328455 aagtcttgtaccaccttccttccctgttgataattctaggaagaaggagaatcgtacaagcaagagcaagagaaggtacttcttttgattatgagttttt 9328356  T
Q  101 tgagtttttgctatgtataagttgatgtcaattcaatggacccatcatatgatatattaagttaaactctatgctaaaggtcaaattgaatt 192  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  9328355 tgagtttttgctatgtataagttgatgtcaattcaatggacccgtcatatgatatatgaagttaaactctatgctaaaggtcaaattgaatt 9328264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 9315875 - 9315647
Alignment:
Q  1 aagtcttgtcccaccttccttccctgttgataattctaagaagaaggagaatcgtacaagcaagagcatgagaaggtacttgttttgattatgagttttt 100  Q
    ||||||||| ||||||||||||||||||||| ||| || |||||||||||||| ||||||||||| || |||||||||||| | |  |||||       |    
T  9315875 aagtcttgtaccaccttccttccctgttgattattgtaggaagaaggagaatcatacaagcaagaacaagagaaggtacttatat--attat-------t 9315785  T
Q  101 tgagtttttgctatgtataagttgatgtcaattcaatggacccatcatatgatatattaagttaaactctatgctaaaggtcaaattgaatttttattat 200  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||| |||||||    
T  9315784 tgagtttttgctatgtataagttaatgtcagttcaatggacccatcatatgatataagtagttaaactctatgctaaaggtcaaattgaattcttattat 9315685  T
Q  201 cggacaaggatactctaattactttgaagtctctacct 238  Q
     |||||||||| | ||||||||||| || |||||||||    
T  9315684 aggacaaggattccctaattactttaaattctctacct 9315647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 12 - 211
Target Start/End: Original strand, 9061456 - 9061653
Alignment:
Q  12 caccttccttccctgttgataattctaagaagaaggagaatcgtacaagcaagagcatgagaaggtacttgttttgattatgag---ttttttgagtttt 108  Q
    |||||| |||||||||||||| || |||||   ||||||||||||||||||||| || |||||||||||| ||     ||||||   |||||||||||||    
T  9061456 cacctttcttccctgttgatacttgtaaga---aggagaatcgtacaagcaagaccaagagaaggtacttattgattatatgagtttttttttgagtttt 9061552  T
Q  109 tgctatgtataagttgatgtcaattcaatggacccatcatatgatatattaagttaaactctatgctaaaggtcaaattgaatttttattatcggacaag 208  Q
    |||||||||||||||||||||| ||||||||  ||||||||| ||||||  |||||||||||||||||||||| |||||||||| || |||| |||||||    
T  9061553 tgctatgtataagttgatgtcagttcaatgg--ccatcatataatatatgtagttaaactctatgctaaaggttaaattgaattcttgttataggacaag 9061650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 12012835 - 12013051
Alignment:
Q  1 aagtcttgtcccaccttccttccctgttgataattctaagaagaaggagaatcgtacaagcaagagcatgagaaggtacttgtt-ttgattatgagtttt 99  Q
    ||||||||| ||||| |||||||||||||||||||||| |||||||| ||||| | |||||||||||| |||||||||||| || ||||||||           
T  12012835 aagtcttgtaccaccctccttccctgttgataattctaggaagaaggggaatcattcaagcaagagcaagagaaggtacttcttattgattat------- 12012927  T
Q  100 ttgagtttttgctatgtataagttgatgtcaattcaatggacccatcatatgatatattaagttaaactctatgctaaaggtcaaattgaatttttatta 199  Q
                   ||||||||| || ||||||||||||||||||||||||||||||  ||||| |||| ||| |||||||||||||||||| ||||||    
T  12012928 ---------------gtataagttaatatcaattcaatggacccatcatatgatatatgtagttagactccatgttaaaggtcaaattgaattcttatta 12013012  T
Q  200 tcggacaaggatactctaattactttgaagtctctacct 238  Q
    | |||||||||| ||||||||||||||||||||||||||    
T  12013013 taggacaaggattctctaattactttgaagtctctacct 12013051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 9284476 - 9284703
Alignment:
Q  1 aagtcttgtcccaccttccttccctgttgataattctaagaagaaggagaatcgtacaagcaagagcatgagaaggtacttgttttgattatgagttttt 100  Q
    ||||||||| ||||||||||||||||||||||||||||  |||||||||||||||  ||||||||||| |||||||||||| |||  ||  ||| || |     
T  9284476 aagtcttgtgccaccttccttccctgttgataattctagtaagaaggagaatcgtttaagcaagagcaagagaaggtacttcttt--at--tga-ttatc 9284570  T
Q  101 tgag-tttttgctatgtataagttgatgtcaattcaatggacccatcatatgatatattaagttaaactctatgctaaaggtcaaattgaatttttatta 199  Q
    |||| |||||||| |||||||||| || | | || |||||||||||||||| || |||  ||||||||| |||  |||||||||||||||||| ||||||    
T  9284571 tgagttttttgctttgtataagttaattttagtttaatggacccatcatataatttatgtagttaaactttatattaaaggtcaaattgaattcttatta 9284670  T
Q  200 tcggacaaggatactctaattactttgaagtct 232  Q
    |||||||||||  ||| ||||||||||| ||||    
T  9284671 tcggacaaggagtctccaattactttgatgtct 9284703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 12 - 223
Target Start/End: Original strand, 9294937 - 9295144
Alignment:
Q  12 caccttccttccctgttgataattctaagaagaaggagaatcgtacaagcaagagcatgagaaggtacttgttttgattatgagttttttgagttttt-g 110  Q
    |||||||||||||||||||||||||||  |||||||||||||||  ||||||||||| |||||||||||| |||  |||  || || | ||||||||| |    
T  9294937 caccttccttccctgttgataattctagtaagaaggagaatcgtttaagcaagagcaagagaaggtacttcttt--att--ga-ttatctgagttttttg 9295031  T
Q  111 ctatgtataagttgatgtcaattcaatggacccatcatatgatatattaagttaaactctatgctaaaggtcaaattgaatttttattatcggacaagga 210  Q
    || |||||||||| || | | || |||||||||||||||| || |||   |||||||||||||||||||||||||||||||| ||||||| ||||| ||     
T  9295032 ctttgtataagttaattttagtttaatggacccatcatataatttatgtggttaaactctatgctaaaggtcaaattgaattcttattataggacagggg 9295131  T
Q  211 tactctaattact 223  Q
    | |||||||||||    
T  9295132 ttctctaattact 9295144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 112 - 238
Target Start/End: Original strand, 11987863 - 11987989
Alignment:
Q  112 tatgtataagttgatgtcaattcaatggacccatcatatgatatattaagttaaactctatgctaaaggtcaaattgaatttttattatcggacaaggat 211  Q
    |||||||||||| || ||||||||||||||||||||| ||||||||  ||||||||| |||| ||||||||||||||||||  |||||| ||||||||||    
T  11987863 tatgtataagttaatatcaattcaatggacccatcatgtgatatatgtagttaaactttatgttaaaggtcaaattgaattcctattataggacaaggat 11987962  T
Q  212 actctaattactttgaagtctctacct 238  Q
      |||||||||||||||||||||||||    
T  11987963 tttctaattactttgaagtctctacct 11987989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 160 - 238
Target Start/End: Complemental strand, 9291644 - 9291566
Alignment:
Q  160 agttaaactctatgctaaaggtcaaattgaatttttattatcggacaaggatactctaattactttgaagtctctacct 238  Q
    |||||||||||||||||||||| |||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||    
T  9291644 agttaaactctatgctaaaggttaaattgaattcttattataggacaaggattctctaattactttgaagtctctacct 9291566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 132 - 238
Target Start/End: Complemental strand, 9364351 - 9364245
Alignment:
Q  132 ttcaatggacccatcatatgatatattaagttaaactctatgctaaaggtcaaattgaatttttattatcggacaaggatactctaattactttgaagtc 231  Q
    ||||||| ||||||||||||||||||  | |||||||||||  |||||||||||| ||||| ||||||| |||||||||  |||||||||||||||||||    
T  9364351 ttcaatgaacccatcatatgatatatgtacttaaactctatattaaaggtcaaatggaattcttattataggacaaggagtctctaattactttgaagtc 9364252  T
Q  232 tctacct 238  Q
    | |||||    
T  9364251 tatacct 9364245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 5 - 81
Target Start/End: Original strand, 7115959 - 7116035
Alignment:
Q  5 cttgtcccaccttccttccctgttgataattctaagaagaaggagaatcgtacaagcaagagcatgagaaggtactt 81  Q
    ||||| ||||||||||||||||||||||||| || |||||||||||||| |||||||||||||| ||||||||||||    
T  7115959 cttgtaccaccttccttccctgttgataattgtaggaagaaggagaatcatacaagcaagagcaagagaaggtactt 7116035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 129 - 238
Target Start/End: Original strand, 12019282 - 12019388
Alignment:
Q  129 caattcaatggacccatcatatgatatattaagttaaactctatgctaaaggtcaaattgaatttttattatcggacaaggatactctaattactttgaa 228  Q
    |||||||||||||||||||||||||||||  |||||||||||||| ||| |    | | ||||| ||||||| |||||||||| ||||||||||||||||    
T  12019282 caattcaatggacccatcatatgatatatgtagttaaactctatgttaatgt---attggaattcttattataggacaaggattctctaattactttgaa 12019378  T
Q  229 gtctctacct 238  Q
    ||||||||||    
T  12019379 gtctctacct 12019388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 12006404 - 12006497
Alignment:
Q  1 aagtcttgtcccaccttccttccctgttgataattctaagaagaaggagaatcgtacaagcaagagcatgagaaggtacttgtt-ttgattatg 93  Q
    ||||||||| |  ||||||||||||||||| |||| || ||||||||||||||||||||||||||||| |||||||||||| || |||||||||    
T  12006404 aagtcttgtactgccttccttccctgttgagaattgtacgaagaaggagaatcgtacaagcaagagcaagagaaggtacttcttattgattatg 12006497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 9274356 - 9274277
Alignment:
Q  1 aagtcttgtcccaccttccttccctgttgataattctaagaagaaggagaatcgtacaagcaagagcatgagaaggtact 80  Q
    |||| |||| ||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||| || ||||||||    
T  9274356 aagttttgtaccaccctccttccctgttgataattctaggaagaaggagaatcatacaagcaagagcaagaaaaggtact 9274277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 139 - 230
Target Start/End: Original strand, 8573931 - 8574024
Alignment:
Q  139 gacccatcatatgatatattaagttaaactctatgctaaaggtcaaattgaatttttat--tatcggacaaggatactctaattactttgaagt 230  Q
    |||||||||||||||||||   ||||||||||||||||||||||||||| |||| ||||   || |||||||||| ||||||||||||||||||    
T  8573931 gacccatcatatgatatatgtggttaaactctatgctaaaggtcaaattaaattcttatcacataggacaaggattctctaattactttgaagt 8574024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 96 - 200
Target Start/End: Complemental strand, 9272417 - 9272313
Alignment:
Q  96 ttttttgagtttttgctatgtataagttgatgtcaattcaatggacccatcatatgatatattaagttaaactctatgctaaaggtcaaattgaattttt 195  Q
    |||||| ||||||||||||||||||||| |||||| || |||| |||||||||||||| | |  | |||||| | |||||||||||| ||||||||| ||    
T  9272417 tttttttagtttttgctatgtataagttaatgtcagtttaatgaacccatcatatgatctttgcaattaaacccaatgctaaaggtctaattgaattctt 9272318  T
Q  196 attat 200  Q
    |||||    
T  9272317 attat 9272313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 101 - 197
Target Start/End: Complemental strand, 10371604 - 10371508
Alignment:
Q  101 tgagtttttgctatgtataagttgatgtcaattcaatggacccatcatatgatatattaagttaaactctatgctaaaggtcaaattgaatttttat 197  Q
    |||||||||| | |||||||||| || ||| ||||||||| ||||||||| ||||||  ||||||||||| || |||||||||||||||||| ||||    
T  10371604 tgagtttttgttgtgtataagttaatatcagttcaatggatccatcatattatatatgcagttaaactctgtgttaaaggtcaaattgaattcttat 10371508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 11987773 - 11987853
Alignment:
Q  1 aagtcttgtcccaccttccttccctgttgataattctaagaagaaggagaatcgtacaagcaagagcatgagaaggtactt 81  Q
    ||||||||| ||||| |||||||||||||||||||||| |||||||| ||||| | ||||||||| || ||||||||||||    
T  11987773 aagtcttgtaccaccctccttccctgttgataattctaggaagaaggggaatcattcaagcaagaccaagagaaggtactt 11987853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 10347617 - 10347552
Alignment:
Q  1 aagtcttgtcccaccttccttccctgttgataattctaagaagaaggagaatcgtacaagcaagag 66  Q
    ||||||||||||||||||||||||||||||||||  || |||||||||||||| | ||||||||||    
T  10347617 aagtcttgtcccaccttccttccctgttgataatcgtaggaagaaggagaatcatccaagcaagag 10347552  T

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Target: chr2; HSP #20
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 8573812 - 8573877
Alignment:
Q  1 aagtcttgtcccaccttccttccctgttgataattctaagaagaaggagaatcgtacaagcaagag 66  Q
    ||||||||| ||||||| ||||||||||||||||| || |||| |||||||| |||||||||||||    
T  8573812 aagtcttgtaccacctttcttccctgttgataattgtaggaaggaggagaattgtacaagcaagag 8573877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 160 - 228
Target Start/End: Complemental strand, 9274268 - 9274200
Alignment:
Q  160 agttaaactctatgctaaaggtcaaattgaatttttattatcggacaaggatactctaattactttgaa 228  Q
    ||||||||| ||||||||||||||  ||||||| ||||||| |||||||||| | ||||||||||||||    
T  9274268 agttaaactttatgctaaaggtcatgttgaattcttattataggacaaggattcactaattactttgaa 9274200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 9291778 - 9291713
Alignment:
Q  1 aagtcttgtcccaccttccttccctgttgataattctaagaagaaggagaatcgtacaagcaagag 66  Q
    ||||||| | ||||||||||||||||||||||||| || |||||||||||||| ||| | ||||||    
T  9291778 aagtcttctaccaccttccttccctgttgataattgtaggaagaaggagaatcatacgaacaagag 9291713  T

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Target: chr2; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 12019174 - 12019267
Alignment:
Q  1 aagtcttgtcccaccttccttccctgttgataattctaagaagaaggagaatcgtacaagcaagagcatgagaaggtacttgtt-ttgattatg 93  Q
    ||||||||| ||||||||||| |||| |||| ||  | | | |||||||||||||||||| ||||||| |||||||||||| || |||||||||    
T  12019174 aagtcttgtaccaccttccttacctgctgatgataatcatacgaaggagaatcgtacaagaaagagcaagagaaggtacttcttattgattatg 12019267  T

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Target: chr2; HSP #24
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 139 - 238
Target Start/End: Original strand, 9066038 - 9066135
Alignment:
Q  139 gacccatcatatgatatattaagttaaactctatgctaaaggtcaaattgaatttttattatcggacaaggatactctaattactttgaagtctctacct 238  Q
    |||||||||||||||||||  || |||||| |  ||| |||||||||||||| | |||| || ||| || ||| |||||||||||||||||| |||||||    
T  9066038 gacccatcatatgatatatgtagctaaacttt--gctcaaggtcaaattgaagtcttatcataggataaagattctctaattactttgaagtttctacct 9066135  T

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Target: chr2; HSP #25
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 162 - 238
Target Start/End: Complemental strand, 10352814 - 10352738
Alignment:
Q  162 ttaaactctatgctaaaggtcaaattgaatttttattatcggacaaggatactctaattactttgaagtctctacct 238  Q
    |||||||||||  || ||||||||||||||| |||| || ||| |||||| ||||||||||||||| |||| |||||    
T  10352814 ttaaactctatattataggtcaaattgaattcttatcataggataaggattctctaattactttgacgtctttacct 10352738  T

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Target: chr2; HSP #26
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 10352965 - 10352885
Alignment:
Q  1 aagtcttgtcccaccttccttccctgttgataattctaagaagaaggagaatcgtacaagcaagagcatgagaaggtactt 81  Q
    ||||||||| ||||||| ||||||||||||||||  || |||| ||||||||| ||||||| |||||  || |||||||||    
T  10352965 aagtcttgtaccaccttacttccctgttgataatcgtaggaagcaggagaatcctacaagcgagagcgagaaaaggtactt 10352885  T

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Target: chr2; HSP #27
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 12006543 - 12006595
Alignment:
Q  186 ttgaatttttattatcggacaaggatactctaattactttgaagtctctacct 238  Q
    ||||||| ||||| | |||||||||| ||||||||||||||||||||||||||    
T  12006543 ttgaattcttattttaggacaaggattctctaattactttgaagtctctacct 12006595  T

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Target: chr2; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 10335712 - 10335649
Alignment:
Q  1 aagtcttgtcccaccttccttccctgttgataattctaagaagaaggagaatcgtacaagcaag 64  Q
    |||||||||  |||||||||| ||||||||||||  || ||||||| |||||||||||||||||    
T  10335712 aagtcttgtttcaccttccttacctgttgataatcgtaggaagaagcagaatcgtacaagcaag 10335649  T

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Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 151
Target Start/End: Original strand, 12006494 - 12006533
Alignment:
Q  112 tatgtataagttgatgtcaattcaatggacccatcatatg 151  Q
    |||||||||||| || ||||||||||||||||||||||||    
T  12006494 tatgtataagttaatatcaattcaatggacccatcatatg 12006533  T

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Target: scaffold0667 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 4309 - 4073
Alignment:
Q  1 aagtcttgtcccaccttccttccctgttgataattctaagaagaaggagaatcgtacaagcaagagcatgagaaggtacttgttttgattat-gagtttt 99  Q
    ||||||||| ||||||||||| ||||||||||||||||  ||||||||||||| |||| ||||||||| || ||||||||| ||  |||||| |||||||    
T  4309 aagtcttgtaccaccttcctttcctgttgataattctagtaagaaggagaatcatacatgcaagagcaagaaaaggtacttatt--gattatcgagtttt 4212  T
Q  100 ttgagtttttgctatgtataagttgatgtcaattcaatggacccatcatatgatatattaagttaaactctatgctaaaggtcaaattgaatttttatta 199  Q
    || |||||||||| |||||||||| || ||  |||||||||||||||||||||| |||| ||||||||||| |||||||  |||||||||||| ||||||    
T  4211 ttcagtttttgctgtgtataagttaatatctgttcaatggacccatcatatgatttatttagttaaactctgtgctaaaactcaaattgaattcttatta 4112  T
Q  200 tcggacaaggatactctaattactttgaagtctctacct 238  Q
    | ||| |||||| || ||||||||||||| |||||||||    
T  4111 taggaaaaggattctataattactttgaattctctacct 4073  T

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Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 98 - 238
Target Start/End: Complemental strand, 37462239 - 37462098
Alignment:
Q  98 ttttgagtttttgctatgtataagttgatgtcaattcaatggacccatcatatgatatattaagttaaactctatgctaaa-ggtcaaattgaattttta 196  Q
    ||||||||||||| ||||||||||||  ||| | |||| |||||||||||||||||||||  ||||||  ||||||||||| |||||||||||||| ||     
T  37462239 ttttgagtttttgttatgtataagtttctgttagttcattggacccatcatatgatatatgtagttaagttctatgctaaaaggtcaaattgaattcttg 37462140  T
Q  197 ttatcggacaaggatactctaattactttgaagtctctacct 238  Q
    |||| |||||||||| ||||||||||||||||||||||||||    
T  37462139 ttataggacaaggattctctaattactttgaagtctctacct 37462098  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 37462321 - 37462244
Alignment:
Q  1 aagtcttgtcccaccttccttccctgttgataattctaagaagaaggagaatcgtacaagcaagagcatgagaaggta 78  Q
    |||||||||  ||||| | |||||||||||||||| || |||||||||| |  | ||||||||||||| |||||||||    
T  37462321 aagtcttgtatcacctcctttccctgttgataattgtaggaagaaggaggacaggacaagcaagagcaagagaaggta 37462244  T

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Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 101 - 239
Target Start/End: Original strand, 29453663 - 29453800
Alignment:
Q  101 tgagtttttgctatgtataagttgatgtcaattcaatggacccatcatatgatatattaagttaaactctatgctaaaggtcaaattgaatttttattat 200  Q
    |||||||||||| |||||||||| || ||| |||||| || ||||||||||||||||  ||||||||| |||| |||| || |||||||||| |||||||    
T  29453663 tgagtttttgctctgtataagttaatttcagttcaatagatccatcatatgatatatgcagttaaactttatgttaaaagt-aaattgaattcttattat 29453761  T
Q  201 cggacaaggatactctaattactttgaagtctctaccta 239  Q
     | |||||||| |||||||||||||||||||||||||||    
T  29453762 agaacaaggattctctaattactttgaagtctctaccta 29453800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 101 - 238
Target Start/End: Original strand, 29443680 - 29443825
Alignment:
Q  101 tgagtttttgctatgtataagttgatgtcaattcaatggacccatcatatgatatattaagttaaactctatgct-aaaggtcaaat-------tgaatt 192  Q
    ||||||||| || |||||||||| || ||||||||||||||||||||||||||||||  |||||||||| ||| | |||||||||||       ||||||    
T  29443680 tgagttttttctttgtataagttaatatcaattcaatggacccatcatatgatatatctagttaaactccatgttaaaaggtcaaattgaattctgaatt 29443779  T
Q  193 tttattatcggacaaggatactctaattactttgaagtctctacct 238  Q
     |||| || |||||||||| ||||||||| ||||||||||||||||    
T  29443780 cttatcataggacaaggattctctaattattttgaagtctctacct 29443825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 128 - 238
Target Start/End: Complemental strand, 29423050 - 29422941
Alignment:
Q  128 tcaattcaatggacccatcatatgatatattaagttaaactctatgctaaaggtcaaattgaatttttattatcggacaaggatactctaattactttga 227  Q
    ||||||||||||||| ||||||||||||||  ||||||||||| |   ||||||||||||||||| |||||||  ||||| ||| ||||||||| |||||    
T  29423050 tcaattcaatggaccgatcatatgatatatctagttaaactctgtta-aaaggtcaaattgaattcttattatatgacaatgattctctaattattttga 29422952  T
Q  228 agtctctacct 238  Q
    |||||||||||    
T  29422951 agtctctacct 29422941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 92 - 221
Target Start/End: Original strand, 29468139 - 29468273
Alignment:
Q  92 tgagttttttgagtttttgctatgtataagttgatgtca-attcaatggacccatc-----atatgatatattaagttaaactctatgctaaaggtcaaa 185  Q
    ||||||||||||||||||| |||||||||||| || ||| | | |||||||| |||     |||||||||||  ||||||||||| |   ||||||||||    
T  29468139 tgagttttttgagtttttgttatgtataagttaatatcacagttaatggacctatcatatgatatgatatatgcagttaaactctgt-taaaaggtcaaa 29468237  T
Q  186 ttgaatttttattatcggacaaggatactctaatta 221  Q
    ||||||| ||||||| |||||| ||| |||||||||    
T  29468238 ttgaattcttattataggacaatgattctctaatta 29468273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 134 - 238
Target Start/End: Original strand, 41967132 - 41967236
Alignment:
Q  134 caatggacccatcatatgatatattaagttaaactctatgctaaaggtcaaattgaatttttattatcggacaaggatactctaattactttgaagtctc 233  Q
    ||||||||||||||||  ||| ||  | |||||||||||| ||||||| |||||||||| ||||||| ||| ||  || |||||||||||| |||| ||     
T  41967132 caatggacccatcatacaatacatgtacttaaactctatgttaaaggttaaattgaattcttattataggataactattctctaattacttcgaaggctt 41967231  T
Q  234 tacct 238  Q
    |||||    
T  41967232 tacct 41967236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 41966994 - 41967036
Alignment:
Q  1 aagtcttgtcccaccttccttccctgttgataattctaagaag 43  Q
    ||||||||| ||||||||||||||||||| ||||| |||||||    
T  41966994 aagtcttgtaccaccttccttccctgttgttaattgtaagaag 41967036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 237
Target Start/End: Complemental strand, 26574600 - 26574525
Alignment:
Q  162 ttaaactctatgctaaaggtcaaattgaatttttattatcggacaaggatactctaattactttgaagtctctacc 237  Q
    |||||||||||  || ||||||||||||||| |||| || ||| |||||| ||||||||||||||| |||| ||||    
T  26574600 ttaaactctatattataggtcaaattgaattcttatcataggataaggattctctaattactttgacgtctttacc 26574525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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