View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0624_high_12 (Length: 252)
Name: NF0624_high_12
Description: NF0624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0624_high_12 |
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Alignment Details
Target: chr6 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 1020692 - 1020933
Alignment:
| Q |
1 |
aataatcgtagaaattgagcattgacaacaattagataaagcatgacacccttttgaatgtgtaaattacaaactataagtatgtagtagcatgttaaat |
100 |
Q |
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| T |
1020692 |
aataatcgtagaaattgagcattgacaacaattagataaagcatgacacccttttgaatgtgtaaattacaaactataagtatgtagtagcatgttaaat |
1020791 |
T |
|
| Q |
101 |
atactaatataaaccaagtttattgtatactcaccttagtttgattcaatgcagtagcacttatattgtcaccttttatctaaatttccatgnnnnnnnn |
200 |
Q |
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| T |
1020792 |
atactaatataaaccaagtttattgtatactcgccttagtttgattcaatgcagtagcacttatattgtcaccttttatctaaatttccatg-aaaaaaa |
1020890 |
T |
|
| Q |
201 |
nnttgtacacttaaaagaaaacaatgtattgacaaagtataat |
243 |
Q |
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|||||||||||||| ||||||| |||||||||||||||||| |
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| T |
1020891 |
aattgtacacttaaaaaaaaacaacgtattgacaaagtataat |
1020933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 78
Target Start/End: Original strand, 37709290 - 37709320
Alignment:
| Q |
48 |
acccttttgaatgtgtaaattacaaactata |
78 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
37709290 |
acccttttgaatgtgtaaattacaaactata |
37709320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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