View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0624_low_11 (Length: 288)
Name: NF0624_low_11
Description: NF0624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0624_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 33 - 276
Target Start/End: Original strand, 31429811 - 31430054
Alignment:
| Q |
33 |
gtcgctaccctccgtcttcccctcaaagaccttcctgaccttcatcactccacaatcgtcaagaaattccccgtcgttcgaccatcgggtcgaccgcagg |
132 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
31429811 |
gtcgctaccctccgtcttcccctcaaagaccttcctgaccttcatcactccacaatcgtcaagaaattctccgtcgttcgaccatcgggtcgaccgcagg |
31429910 |
T |
|
| Q |
133 |
ggaaaattcatctcaaaattagcctccttggccgctctcctcctccgccatcgccaccgatatcacaaatgtttgattataacaacacaatccctaatcc |
232 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31429911 |
ggaaaattcatctcaaaattagcctccttggccgctctcctcctccgccatcgccaccgatatcacaaatgtttgattataacaacacaatccctaatcc |
31430010 |
T |
|
| Q |
233 |
tcaccctaaccctaaccctaattcttcaaatccttcctttgttt |
276 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31430011 |
tcaccctaaccctaaccctaattcttcaaatccttcctttgttt |
31430054 |
T |
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