View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0624_low_15 (Length: 273)
Name: NF0624_low_15
Description: NF0624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0624_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 156; Significance: 6e-83; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 77 - 232
Target Start/End: Original strand, 515783 - 515938
Alignment:
| Q |
77 |
ctgaaaattgtaatggagttttcatttcgtatgattttcttgatcggaggaagggatttcctcgggtcaagaatgtcacggcacaatcttggtcctttaa |
176 |
Q |
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| T |
515783 |
ctgaaaattgtaatggagttttcatttcgtatgattttcttgatcggaggaagggatttcctcgggtcaagaatgtcacggcacaatcttggtcctttaa |
515882 |
T |
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| Q |
177 |
tgcaaccgcaacagttctcaacacaggaaaagatgtacttaaagcatggaaattgt |
232 |
Q |
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| T |
515883 |
tgcaaccgcaacagttctcaacacaggaaaagatgtacttaaagcatggaaattgt |
515938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 39120106 - 39120143
Alignment:
| Q |
24 |
ctgagtggcactacaatactgcaagtcactctgccaca |
61 |
Q |
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| T |
39120106 |
ctgagtggcactacgatactgcaagtcactctgccaca |
39120143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 65
Target Start/End: Complemental strand, 38611453 - 38611421
Alignment:
| Q |
33 |
actacaatactgcaagtcactctgccacaggtt |
65 |
Q |
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| T |
38611453 |
actacaatacagcaagtcactctgccacaggtt |
38611421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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