View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0624_low_16 (Length: 265)
Name: NF0624_low_16
Description: NF0624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0624_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 11849997 - 11849761
Alignment:
| Q |
1 |
tccgagcggtttcgacccatcatctttccagtcaaagagatgttgactaagagttccctgaggcatgtattcaaagacaagaagtttctcattgtcatcc |
100 |
Q |
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| T |
11849997 |
tccgagcggtttcgacccatcgtctttccagtcaaagatatgttgactaagagttccctgaggcatgtattcaaagacaagaagtttctcgttgtcgtcc |
11849898 |
T |
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| Q |
101 |
aagcaatagccatggagtgcaaccaaatgcctgtgtcgaaccctagtgagaaccgcgatttcagacttgatctcattcaacccttcgtcaccaaccattt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
11849897 |
aagcaatagccatggagtgcaaccaaatgcctgtgtcgaaccctagtgagaaccgcgatttcagacttgatctcatttaacccttcgtcaccaaccattt |
11849798 |
T |
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| Q |
201 |
cagatttcatccttttcactgcaatctttgttccatc |
237 |
Q |
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| T |
11849797 |
cagatttcatccttttcactgcaatctttgttccatc |
11849761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 11857132 - 11857368
Alignment:
| Q |
1 |
tccgagcggtttcgacccatcatctttccagtcaaagagatgttgactaagagttccctgaggcatgtattcaaagacaagaagtttctcattgtcatcc |
100 |
Q |
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||||||||||||| |||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |
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| T |
11857132 |
tccgagcggtttcaacccgtcgtctttccactcaaagagatgttgactaagagttccctgaggcatgtattcaaaaacaagaagtttctcattgtcgtcc |
11857231 |
T |
|
| Q |
101 |
aagcaatagccatggagtgcaaccaaatgcctgtgtcgaaccctagtgagaaccgcgatttcagacttgatctcattcaacccttcgtcaccaaccattt |
200 |
Q |
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| T |
11857232 |
aagcaatagccatggagtgcaaccaaatgcctgtgtcgaaccttagtgagaaccgcgatttcggacttgatctcattcaacccttcatcaccaaccattt |
11857331 |
T |
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| Q |
201 |
cagatttcatccttttcactgcaatctttgttccatc |
237 |
Q |
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| T |
11857332 |
cagatttcatccttttcactgcaatcgttgttccatc |
11857368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 5 - 237
Target Start/End: Complemental strand, 11836622 - 11836390
Alignment:
| Q |
5 |
agcggtttcgacccatcatctttccagtcaaagagatgttgactaagagttccctgaggcatgtattcaaagacaagaagtttctcattgtcatccaagc |
104 |
Q |
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||||||||| |||| || |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||| |
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| T |
11836622 |
agcggtttcaacccgtcgtctttccaatcaaagagatgttgactaagagttccctgaggcatgtattcgaagacaagaagtttctcattttcgtccaagc |
11836523 |
T |
|
| Q |
105 |
aatagccatggagtgcaaccaaatgcctgtgtcgaaccctagtgagaaccgcgatttcagacttgatctcattcaacccttcgtcaccaaccatttcaga |
204 |
Q |
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| T |
11836522 |
aatagccaaggagtgcaaccaaatgcctgtgtcgaaccttagtgagaaccgcgatttcggacttgatctcattcagcccttggtcaccaaccatttcaga |
11836423 |
T |
|
| Q |
205 |
tttcatccttttcactgcaatctttgttccatc |
237 |
Q |
| |
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|||||||||||| |||||||||||||||||||| |
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| T |
11836422 |
tttcatccttttaactgcaatctttgttccatc |
11836390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 23 - 238
Target Start/End: Original strand, 27443932 - 27444147
Alignment:
| Q |
23 |
tctttccagtcaaagagatgttgactaagagttccctgaggcatgtattcaaagacaagaagtttctcattgtcatccaagcaatagccatggagtgcaa |
122 |
Q |
| |
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||||||| |||||||||||||||||||||||| || ||||||| |||||||| ||||| |||||||||| | || |||||||||| |||| | || |||| |
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| T |
27443932 |
tctttccggtcaaagagatgttgactaagagtgccttgaggcaggtattcaaggacaataagtttctcactctcttccaagcaatggccacgaagcgcaa |
27444031 |
T |
|
| Q |
123 |
ccaaatgcctgtgtcgaaccctagtgagaaccgcgatttcagacttgatctcattcaacccttcgtcaccaaccatttcagatttcatccttttcactgc |
222 |
Q |
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||| |||| |||||| || | ||| ||||| | |||| ||||||| ||| ||||| |||| |||||||| || |||| | ||||||||| || || |
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| T |
27444032 |
ccagatgcttgtgtctaagcttagaaagaacttccgtttcggacttgaactccttcaaacctttctcaccaacaatctcaggtaccatcctttttaccgc |
27444131 |
T |
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| Q |
223 |
aatctttgttccatct |
238 |
Q |
| |
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||| ||||||||||| |
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| T |
27444132 |
aattgttgttccatct |
27444147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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