View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0624_low_17 (Length: 261)
Name: NF0624_low_17
Description: NF0624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0624_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 31377047 - 31376820
Alignment:
| Q |
1 |
gcatcaaactcatttgagatttaggagctttgaacattcgtagcacacgggtagggagaaaatggagtttcaagattgaaactaaacttgaacaagacaa |
100 |
Q |
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| T |
31377047 |
gcatcaaactcatttgagatttaggagctttgaacatttgta---cacgggtaggaagaaaatggagtttcaagattgaaactaaacttgaacaagacaa |
31376951 |
T |
|
| Q |
101 |
gtttgaccatgctaagttgatgaagaatgttgagaaattcttccgtttgaaaatgctatagatccgagtgggttgaagaagaataaaaaatggtggtcgc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||| |
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| T |
31376950 |
gtttgaccatgctaagttgatgaagaatgttgagaaattcttccgtttgaaaatgctatagatccgagtggattgaaggagaat-aaaaatggtggtcgt |
31376852 |
T |
|
| Q |
201 |
ggcggcgaaatgttgcagagagaagagggaag |
232 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
31376851 |
ggcggcgaaatgttgcagagagaagagggaag |
31376820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 43601589 - 43601824
Alignment:
| Q |
1 |
gcatcaaactcatttgagatttaggagctttgaacattcgtagcacacgggtagggaga--aaatggagtttcaagattgaaactaaacttgaacaagac |
98 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
43601589 |
gcatcaaacccatttgagatttaggagctttgaacattcgtagcacacgagtagggagagaaaatggagtttcaagattgaaactaaacttgaacaagac |
43601688 |
T |
|
| Q |
99 |
aagtttgaccatgctaagttgatgaagaatgttgagaaattc---ttccgtttgaaaatgctatagatccgagtgggttgaagaagaataaaaaatggtg |
195 |
Q |
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|| |||||||||| ||||||||||||||| || ||||||||| ||||||||||||||||||||||||||| || ||||| | ||||| |||||||||| |
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| T |
43601689 |
aaatttgaccatgttaagttgatgaagaaggtagagaaattcagtttccgtttgaaaatgctatagatccgactgagttgagggagaat-aaaaatggtg |
43601787 |
T |
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| Q |
196 |
gtcgcggcggcgaaatgttgcagagagaagagggaag |
232 |
Q |
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||| || ||||| |||||||||||||||||||||||| |
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| T |
43601788 |
gtcacgacggcggaatgttgcagagagaagagggaag |
43601824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 36984670 - 36984436
Alignment:
| Q |
1 |
gcatcaaactcatttgagatttaggagctttgaacattcgtagcacacgggtagggagaaaatggagtttcaagattgaaactaaacttgaacaagacaa |
100 |
Q |
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|
||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36984670 |
gcatcaaacccatttgagatttaggagctttgaacattcgtagcacacggatagggagaaaatggagtttcaagattgaaactaaacttgaacaagacaa |
36984571 |
T |
|
| Q |
101 |
gtttgaccatgctaagttgatgaagaatgttgagaaattc---ttccgtttgaaaatgctatagatccgagtgggttgaagaagaataaaaaatggtggt |
197 |
Q |
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||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||||| | |||||||||||||||||| |
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| T |
36984570 |
gtttgaccatgttaagttgatgaagaaggttgagaaattctatttccgtttgaaaatgctatagatccgactgggttgagggagaataaaaaatggtggt |
36984471 |
T |
|
| Q |
198 |
cgcggcggcgaaatgttgcagagagaagagggaag |
232 |
Q |
| |
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|||||||||| ||||||| |||||||||||||||| |
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| T |
36984470 |
cgcggcggcggaatgttgtagagagaagagggaag |
36984436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 2 - 232
Target Start/End: Complemental strand, 40842521 - 40842292
Alignment:
| Q |
2 |
catcaaactcatttgagatttaggagctttgaacattcgtagcacacgggtagggagaaaatggagtttcaagattgaaactaaacttgaacaagacaag |
101 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40842521 |
catcaaacccatttgagatttaggagctttgaacattcgtagcacacgagtagggagaaaatggagtttcaagattgaaactaaacttgaacaagacaag |
40842422 |
T |
|
| Q |
102 |
tttgaccatgctaagttgatgaagaatgttgagaaatt---cttccgtttgaaaatgctatagatccgagtgggttgaagaagaataaaaaatggtggtc |
198 |
Q |
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|||||||||| |||||||||||||||||| |||||||| ||| ||||||||||||||||||||||| |||||||| | ||||||||||||||||||| |
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| T |
40842421 |
tttgaccatgttaagttgatgaagaatgtagagaaattatgtttctgtttgaaaatgctatagatccgactgggttgagggagaataaaaaatggtggtc |
40842322 |
T |
|
| Q |
199 |
gcggcggcgaaatgttgcagagagaagagggaag |
232 |
Q |
| |
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||||||||| |||| |||||||||||||||| |
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| T |
40842321 |
gcggcggcggaatg----agagagaagagggaag |
40842292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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