View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0624_low_19 (Length: 252)
Name: NF0624_low_19
Description: NF0624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0624_low_19 |
 | |
|
| [»] chr1 (5 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 145; Significance: 2e-76; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 96 - 252
Target Start/End: Complemental strand, 11850379 - 11850223
Alignment:
| Q |
96 |
gcatagtatttgagaatgttgcaaaaaattgtttctatactctatagttcatctgagactaaagtagaaacctacacaattaacatttgcaataaaaaac |
195 |
Q |
| |
|
||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
11850379 |
gcatagtatttgagaatgttgcaaaaatttgtctctatactctatagttcatctgagactaaagtagaaacctacacaattaacatgtgcaataaaaaac |
11850280 |
T |
|
| Q |
196 |
agtaatgcaacaaaaattattctaaattataattaacatgtgattacctgcatactc |
252 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11850279 |
agtaatgcaacaaaaattattctaaattataattaacatgtgattacctgcatactc |
11850223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 11850468 - 11850407
Alignment:
| Q |
8 |
cgaagaatatgaatcatgtttgcctgttttctcaatacagttctttcaagataaaatttgat |
69 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11850468 |
cgaacaatatgaatcatgtttgcctgttttctcaatacagttctttcaagataaaatttgat |
11850407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 200 - 252
Target Start/End: Original strand, 11856851 - 11856903
Alignment:
| Q |
200 |
atgcaacaaaaattattctaaattataattaacatgtgattacctgcatactc |
252 |
Q |
| |
|
|||||||||||| | |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
11856851 |
atgcaacaaaaaaaaatctaaattataattaaaatgtgattacctgcatactc |
11856903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 131
Target Start/End: Original strand, 11856731 - 11856766
Alignment:
| Q |
96 |
gcatagtatttgagaatgttgcaaaaaattgtttct |
131 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
11856731 |
gcatagtatttgagaatgttgcaaaaaattgtttct |
11856766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 203 - 252
Target Start/End: Complemental strand, 11836900 - 11836852
Alignment:
| Q |
203 |
caacaaaaattattctaaattataattaacatgtgattacctgcatactc |
252 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
11836900 |
caacaaaaaaaattctaaattataattaaaatgtg-ttacctgcatactc |
11836852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2693 times since January 2019
Visitors: 4010