View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0624_low_2 (Length: 491)
Name: NF0624_low_2
Description: NF0624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0624_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 106; Significance: 8e-53; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 275 - 480
Target Start/End: Complemental strand, 6163865 - 6163668
Alignment:
| Q |
275 |
tttcaagttttaataaaaatgagagagctaaagttgtgaatggagaaaaactttgaatcaaatgttttaagttttaaataatacaaccacaatatttgaa |
374 |
Q |
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| T |
6163865 |
tttcaaatttcaataaaaatgagagagctaaagttgtgaatggagaaaaactttgaat-----gttttaagttttaaataatataaccacgatatttgaa |
6163771 |
T |
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| Q |
375 |
catcatannnnnnnnaggttcattcaaggctccttttaatctttatctctatattcctatcacatgaccaaacctattacattatcacatcaatctattt |
474 |
Q |
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| T |
6163770 |
tattatattttttt-aggttcattcaacgccccttttaatttttatct--atattcctatcacatgatcaaacctattacattatcacatcaatctattt |
6163674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 158 - 267
Target Start/End: Complemental strand, 6164093 - 6163984
Alignment:
| Q |
158 |
tttttgtattaggtgttgcaggggattggtgtttcctcaagtgtcgacttaattaagatgtcatatattcacgtatatgcttttgcaccttactagtctt |
257 |
Q |
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| T |
6164093 |
tttttgtattaggtgttgcagtggattggtgtttcctcaagtgtcgacttaattaagatgtcatatattcacgtatatgcttttgcaccttactagtctt |
6163994 |
T |
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| Q |
258 |
tctataaaac |
267 |
Q |
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| T |
6163993 |
tctataaaac |
6163984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 30 - 166
Target Start/End: Complemental strand, 6164412 - 6164280
Alignment:
| Q |
30 |
cttttattgacgaggatttctttagaaataggatgactttgcaattctatagatttgattaattg-ttttcatggattttggtctagtctctcaagttgt |
128 |
Q |
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| T |
6164412 |
cttttattgacgaggatttctttagaaataggatgactttgcaattctatagatttgattaattgtttttcttggattttggtctagtctctca-----t |
6164318 |
T |
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| Q |
129 |
tgttatctttactttttaattatcaataatttttgtat |
166 |
Q |
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| T |
6164317 |
tgttatctttactttttaattatcaataaactttgtat |
6164280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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