View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0624_low_21 (Length: 250)
Name: NF0624_low_21
Description: NF0624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0624_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 20283213 - 20282974
Alignment:
| Q |
1 |
ttacaaatctacatcttcaaactagtgttgtaggtgaaatctatttgatcatcattgtgcatctagttcttttgatccttctaaaattgcatctctctca |
100 |
Q |
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||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20283213 |
ttacaaatctatattttcaaactagtgttgtaggtgaaatctatttgatcatcattgtgcatctagttcttttgatccttctaaaattgcatctctctca |
20283114 |
T |
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| Q |
101 |
taggaaactgtgcaggagaaaagccagaagtacaaagagggaaagtttgttcttgaaaggttaaaattatgctattttgctatcacaacttacgttgagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
20283113 |
taggaaactgtgcaggagaaaagccagaagtacaaagagggaaagtttgttcttgaaaggttaaaattatgctattttgctatcacaacttaagttgagt |
20283014 |
T |
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| Q |
201 |
tttttcttatgcttaatgtgtgtttttactgattgttcat |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
20283013 |
tttttcttatgcttaatgtgtgtttttactgattgttcat |
20282974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 21069841 - 21069602
Alignment:
| Q |
1 |
ttacaaatctacatcttcaaactagtgttgtaggtgaaatctatttgatcatcattgtgcatctagttcttttgatccttctaaaattgcatctctctca |
100 |
Q |
| |
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||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21069841 |
ttacaaatctatattttcaaactagtgttgtaggtgaaatctatttgatcatcattgtgcatctagttcttttgatccttctaaaattgcatctctctca |
21069742 |
T |
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| Q |
101 |
taggaaactgtgcaggagaaaagccagaagtacaaagagggaaagtttgttcttgaaaggttaaaattatgctattttgctatcacaacttacgttgagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
21069741 |
taggaaactgtgcaggagaaaagccagaagtacaaagagggaaagtttgttcttgaaaggttaaaattatgctattttgctatcacaacttaagttgagt |
21069642 |
T |
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| Q |
201 |
tttttcttatgcttaatgtgtgtttttactgattgttcat |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
21069641 |
tttttcttatgcttaatgtgtgtttttactgattgttcat |
21069602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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