View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0624_low_22 (Length: 248)
Name: NF0624_low_22
Description: NF0624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0624_low_22 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 88; Significance: 2e-42; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 149 - 248
Target Start/End: Original strand, 6399398 - 6399497
Alignment:
| Q |
149 |
tatgataacttaggcacatttcttgccatttatcatcattcttgtaaactcattcaaatcaataagaccatctccatcaccatcaacccctttcaccatt |
248 |
Q |
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| T |
6399398 |
tatgataacttaggcacatttcttgccattcatcatcatccttgtaaactcattcaaatcaataagaccatctccatcactatcaacccctttcaccatt |
6399497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 149 - 248
Target Start/End: Complemental strand, 6413104 - 6413005
Alignment:
| Q |
149 |
tatgataacttaggcacatttcttgccatttatcatcattcttgtaaactcattcaaatcaataagaccatctccatcaccatcaacccctttcaccatt |
248 |
Q |
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| T |
6413104 |
tatgataacttaggcacatttcttgccattcatcatcatccttgtaaactcattcaaatcaataagaccatctccatcactatcaacccctttcaccatt |
6413005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 149 - 248
Target Start/End: Complemental strand, 6410358 - 6410259
Alignment:
| Q |
149 |
tatgataacttaggcacatttcttgccatttatcatcattcttgtaaactcattcaaatcaataagaccatctccatcaccatcaacccctttcaccatt |
248 |
Q |
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|||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |
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| T |
6410358 |
tatgatgacttaggcacatttcttgccattcatcatcattcttgtaaactcattcaaatcaataagaccatctccatcaccatcgacacctttcaccatt |
6410259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 156 - 243
Target Start/End: Original strand, 6402920 - 6403007
Alignment:
| Q |
156 |
acttaggcacatttcttgccatttatcatcattcttgtaaactcattcaaatcaataagaccatctccatcaccatcaacccctttca |
243 |
Q |
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|||||| |||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
6402920 |
acttagacacatttcttgccactcatcatcatccttgtaaactcattcaaatcaataagaccatctccatcaccatcgacacctttca |
6403007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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