View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0624_low_3 (Length: 484)
Name: NF0624_low_3
Description: NF0624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0624_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 157; Significance: 3e-83; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 206 - 474
Target Start/End: Complemental strand, 15965206 - 15964929
Alignment:
| Q |
206 |
aacaacaaaatttattaatatctgagtctctaccaagaaaaatagagaccagcaacacagaaactacatatcaaaaggtgtcgtacatagtcgaaacacc |
305 |
Q |
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| T |
15965206 |
aacaacaaaatttattaatatctgggtctg--ccaagaaaataagagaccgacaacacggaaactacatatcaaaaggt-tcgtacatagtcgaaacacc |
15965110 |
T |
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| Q |
306 |
tagaagaaaacacatatatcgtacatcataaacaccaataaagacacaattccacaatggctatcatcaacaccaat------------nnnnnnnncct |
393 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| ||| |
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| T |
15965109 |
tagaagaaaacacatatatcgtacatcataaacatcaataaagacacaattccacaacggctatcatcaacaccaattaaagaaaaagaaaaaaaaacct |
15965010 |
T |
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| Q |
394 |
ccaaagcctacaccaaaacccaacaaaacccccttaaaccagcagcatccaaataataagctaaaagcctccaacttcatc |
474 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
15965009 |
ccaaagcctacaccaaaacccaacaaaacccccttaaaccagcagcatccaaataataagctaaaagcctccaactccatc |
15964929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 303 - 354
Target Start/End: Complemental strand, 40796794 - 40796743
Alignment:
| Q |
303 |
acctagaagaaaacacatatatcgtacatcataaacaccaataaagacacaa |
354 |
Q |
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| T |
40796794 |
acctaaaagaaaatacatacatcgtacatcataaacaccaataaagacacaa |
40796743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 257 - 354
Target Start/End: Original strand, 536591 - 536690
Alignment:
| Q |
257 |
gcaacacagaaactacatatcaaaaggtgtcgtacatagtcgaaacacctagaagaaaacacatatat--cgtacatcataaacaccaataaagacacaa |
354 |
Q |
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|||||||||||||| |||||||||||| ||| || | || |||||||| || |||| ||||| | |||||||||||||||||||||||||||||| |
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| T |
536591 |
gcaacacagaaactgcatatcaaaaggcgtcatatacagatagaacacctaaaaaaaaatacatagacaccgtacatcataaacaccaataaagacacaa |
536690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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