View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0624_low_4 (Length: 478)
Name: NF0624_low_4
Description: NF0624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0624_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 362; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 30 - 451
Target Start/End: Complemental strand, 25733411 - 25732990
Alignment:
| Q |
30 |
atccatgtgtccaacactgtttgtctgaagccaggaatcaaccaagaaactctttctgatctgcctttcttctcatcggatgatagaatgtcattaaaat |
129 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25733411 |
atccatgtgtccaacactgtttgtctgaagccaggaatcaaccaagaaactctttctgatctgcctttcttctcatcggatgatagaatgtcattaaaat |
25733312 |
T |
|
| Q |
130 |
ctccgaatacacaccatggtaaagatgatgctcctgctaggtttctcaaaacattccatgattctttccttctccctatttcttgcattccatataaatg |
229 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
25733311 |
ctacgaatacacaccatggtaaagatgatgctcctgctaggtttctcaaaacattccatgattctttccttctccctatttcttgcattccatagaaatg |
25733212 |
T |
|
| Q |
230 |
agtctaacgccattttccaattaaagagtcatccacttcaacatcaatatgattttgtgaataaattgtgatggtgcaatttattgttttttacaaataa |
329 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |
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| T |
25733211 |
agtcaaacgccattttccaattaaagagtcatccacttcaacatcaatatgattttgtgaataaattgtgatggtgcaatttattgtttttttcaaagaa |
25733112 |
T |
|
| Q |
330 |
cggccttgcctcctcctttaccaattttatcaactatgaaacaggaatcaacagacaagacatgcattaattcttcaattttatttaagcttgccattgt |
429 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||| ||||||||| |
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| T |
25733111 |
aggccaatcctcctcctttaccaattttatcaactatgaaacaggaatcaaaagacaagagatacattaattcttcaattttatttaaggctgccattgt |
25733012 |
T |
|
| Q |
430 |
ttcacacagaaaaattccttcc |
451 |
Q |
| |
|
|||| ||||||||||||||||| |
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|
| T |
25733011 |
ttcagacagaaaaattccttcc |
25732990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 398 - 455
Target Start/End: Original strand, 30472584 - 30472641
Alignment:
| Q |
398 |
aattcttcaattttatttaagcttgccattgtttcacacagaaaaattccttccggtt |
455 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |
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|
| T |
30472584 |
aattcttcaattttatttaaagctgccattgtttcagacagaaaaattccttccggtt |
30472641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 237 - 445
Target Start/End: Original strand, 16939616 - 16939825
Alignment:
| Q |
237 |
cgccattttccaattaaagagtcatccacttcaacatcaatatgattttgtgaataaattgtgatggtgcaatt-tattgttttttacaaataacggcct |
335 |
Q |
| |
|
|||||||||||| |||| |||||| ||||||| | |||||| ||||||||||||||| | |||||| | ||||| | ||||||| || | | ||| |
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|
| T |
16939616 |
cgccattttccacttaatgagtcaaccacttctatatcaatgtgattttgtgaataattagtgatgatacaattagctggttttttccataagaaagcca |
16939715 |
T |
|
| Q |
336 |
tgcctcctcctttaccaattttatcaactatgaaa-caggaatcaacagacaagacatgcattaattcttcaattttatttaagcttgccattgtttcac |
434 |
Q |
| |
|
||||| ||| |||||||| |||||||| ||||| || |||||| |||||| | | |||||||||||||||||||||| ||||||||||||| |
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|
| T |
16939716 |
aacctccacctctaccaattctatcaact-tgaaagcaataatcaaaagacaaagtgtactttaattcttcaattttatttaaagctgccattgtttcag |
16939814 |
T |
|
| Q |
435 |
acagaaaaatt |
445 |
Q |
| |
|
||||||||||| |
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|
| T |
16939815 |
acagaaaaatt |
16939825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 154
Target Start/End: Original strand, 30472223 - 30472339
Alignment:
| Q |
38 |
gtccaacactgtttgtctgaagccaggaatcaaccaagaaactctttctgatctgcctttcttctcatcggatgatagaatgtcattaaaatctccgaat |
137 |
Q |
| |
|
|||||| |||| ||| ||||| ||| | |||| ||||| |||| ||||| || ||||||||||| || ||||| |||||||| || |||||||| | |
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|
| T |
30472223 |
gtccaatactgcttgcctgaaaccacggatcagccaaggcgctctctctgacctacctttcttctcttcagatgacagaatgtcgttgaaatctccaata |
30472322 |
T |
|
| Q |
138 |
acacaccatggtaaaga |
154 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
30472323 |
acacaccatggtaaaga |
30472339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 398 - 455
Target Start/End: Original strand, 45278188 - 45278245
Alignment:
| Q |
398 |
aattcttcaattttatttaagcttgccattgtttcacacagaaaaattccttccggtt |
455 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |
|
|
| T |
45278188 |
aattcttcaattttatttaaagctgccattgtttcagacagaaaaattccttccggtt |
45278245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 338 - 455
Target Start/End: Complemental strand, 35318626 - 35318509
Alignment:
| Q |
338 |
cctcctcctttaccaattttatcaactatgaaacaggaatcaacagacaagacatgcattaattcttcaattttattta-agcttgccattgtttcacac |
436 |
Q |
| |
|
||||||||| |||||||| |||||| || || || ||||||| |||||| | || | | || |||||||||||||||| ||| || |||||||||| || |
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|
| T |
35318626 |
cctcctcctctaccaattcgatcaaccataaagcaagaatcaaaagacaaaatatacttcaaatcttcaattttatttagagc-tgtcattgtttcagac |
35318528 |
T |
|
| Q |
437 |
agaaaaattccttccggtt |
455 |
Q |
| |
|
|||||||| |||||||||| |
|
|
| T |
35318527 |
agaaaaatcccttccggtt |
35318509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 154
Target Start/End: Original strand, 45277827 - 45277943
Alignment:
| Q |
38 |
gtccaacactgtttgtctgaagccaggaatcaaccaagaaactctttctgatctgcctttcttctcatcggatgatagaatgtcattaaaatctccgaat |
137 |
Q |
| |
|
|||||| |||| ||| ||||| ||| | |||| ||||| |||| ||||| || ||||||||||| || ||||| |||||||| || |||||||| | |
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|
| T |
45277827 |
gtccaatactgcttgcctgaaaccacggatcagccaaggcgctctctctgacctacctttcttctcttcagatgacagaatgtcgttgaaatctccaata |
45277926 |
T |
|
| Q |
138 |
acacaccatggtaaaga |
154 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
45277927 |
acacaccatggtaaaga |
45277943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 396 - 449
Target Start/End: Original strand, 12275870 - 12275923
Alignment:
| Q |
396 |
ttaattcttcaattttatttaagcttgccattgtttcacacagaaaaattcctt |
449 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||||| | ||||| ||||||| |
|
|
| T |
12275870 |
ttaattcttcaattttatttaaggttgtcattgtttcagatagaaatattcctt |
12275923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 455
Target Start/End: Original strand, 33308805 - 33308922
Alignment:
| Q |
338 |
cctcctcctttaccaattttatcaactatgaaacaggaatcaacagacaagacatgcattaattcttcaattttattta-agcttgccattgtttcacac |
436 |
Q |
| |
|
||||||||| |||||||| |||||| || || || ||||||| |||||| | || | | || |||| ||||||||||| ||| || |||||||||| || |
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|
| T |
33308805 |
cctcctcctctaccaattcgatcaaccataaagcaagaatcaaaagacaaaatatacttcaaatctttaattttatttagagc-tgtcattgtttcagac |
33308903 |
T |
|
| Q |
437 |
agaaaaattccttccggtt |
455 |
Q |
| |
|
|||||||| |||||||||| |
|
|
| T |
33308904 |
agaaaaatcccttccggtt |
33308922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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