View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0624_low_7 (Length: 383)
Name: NF0624_low_7
Description: NF0624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0624_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 7e-99; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 103 - 289
Target Start/End: Original strand, 35294884 - 35295070
Alignment:
| Q |
103 |
ccgttgacgccggaaaactctccctcatttccaaaactttccattctgctgccaactccgacgatgtctgggatcgctttctacctcctcattctccttt |
202 |
Q |
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| T |
35294884 |
ccgttgacgccggaaaactctccctcgtttccaaaactttccattctgctgccaactccgacgatgtctgggatcgctttctacctcctcattctccttt |
35294983 |
T |
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| Q |
203 |
cattgactctataatcttacaatctccttcccttgtcaaagttcctaccaaaaaggatctttatctcgccctatctgatcgccctat |
289 |
Q |
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| T |
35294984 |
cattgactctataatcttacaatctccttcccttgtcaaagttcctaccaaaaaggatctttatctcgccctatctgatcgccctat |
35295070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 287
Target Start/End: Complemental strand, 35273156 - 35273079
Alignment:
| Q |
210 |
tctataatcttacaatctccttcccttgtcaaagttcctaccaaaaaggatctttatctcgccctatctgatcgccct |
287 |
Q |
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| T |
35273156 |
tctattatctcacactctccttcccttaccaacattcctaccaaaaaggatctctatcttgctctatctgatcgccct |
35273079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 289
Target Start/End: Complemental strand, 35207204 - 35207136
Alignment:
| Q |
221 |
acaatctccttcccttgtcaaagttcctaccaaaaaggatctttatctcgccctatctgatcgccctat |
289 |
Q |
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| T |
35207204 |
acaatctccttcacttgccaacattccaaccaaaaaggctctctatctcgctctctctgatcgtcctat |
35207136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 227 - 286
Target Start/End: Original strand, 18558273 - 18558332
Alignment:
| Q |
227 |
tccttcccttgtcaaagttcctaccaaaaaggatctttatctcgccctatctgatcgccc |
286 |
Q |
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| T |
18558273 |
tccttccattgccaacgctccaaccaaaaaggctctctatctcgccctatctgatcgccc |
18558332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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