View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0625_high_2 (Length: 251)
Name: NF0625_high_2
Description: NF0625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0625_high_2 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 9 - 251
Target Start/End: Original strand, 27990175 - 27990413
Alignment:
| Q |
9 |
caacaatatgatacaactcaccatcaaattatagtttaacttattatatttcttgtatatatcatacgctacctatagttagttattagttagttgatgt |
108 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27990175 |
caacaaaatgatacaactcaccatcaaattatagtttagcttattatatttctt----atatcatacgctacctatagttagttattagttagttgatgt |
27990270 |
T |
|
| Q |
109 |
gattctctacatacgagcacatagctatcatagaccatatactaacactataaatgttagttgtaacttcaacattcattaagagaaatgagtttgtttg |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27990271 |
gattctctacatacgagcacatagctatcatagaccatatactaacactataaatgttagttgtaacttcaacattcattaagagaaatgagtttgtttg |
27990370 |
T |
|
| Q |
209 |
attaattttctctctcacagtagtcatttctaataacttaaac |
251 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
27990371 |
attaattttctctctcacaatagtcatttctaagaacttaaac |
27990413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 6 - 251
Target Start/End: Original strand, 28000628 - 28000863
Alignment:
| Q |
6 |
ctccaacaatatgatacaactcaccatcaaattatagtttaacttattatatttcttgtatatatcatacgctacctatagttagttattagttagttga |
105 |
Q |
| |
|
||||||||| | ||||||||||||||||||| ||||||||| ||||||||||||||| |||||| |||||||||| |||||||| || |
|
|
| T |
28000628 |
ctccaacaaaaggatacaactcaccatcaaactatagtttagcttattatatttctt----atatcacacgctacctagagttagtt-----------ga |
28000712 |
T |
|
| Q |
106 |
tgtgattctctacatacgagcacat----agctatcatagaccatatactaac-actataaatgttagttgtaacttcaacattcattaagagaaatgag |
200 |
Q |
| |
|
||||||| ||| |||| |||||||| |||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28000713 |
tgtgattttctgcataagagcacatgattagctatcatataccatatactaactactataaacgttagttgtaacttcaacattcattaagagaaatgag |
28000812 |
T |
|
| Q |
201 |
tttgtttgattaattttctctctcacagtagtcatttctaataacttaaac |
251 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
28000813 |
tttgtttgattaattttctctctcacaatagtcatttctaagaacttaaac |
28000863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3164 times since January 2019
Visitors: 4029