View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0625_low_1 (Length: 330)
Name: NF0625_low_1
Description: NF0625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0625_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 30 - 318
Target Start/End: Complemental strand, 34052133 - 34051845
Alignment:
| Q |
30 |
aattacctgtaggagctgcttagcaaggtcaatagagataagtccagcactacaacccataccaccaagattataactttgaacattccctcttaactta |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34052133 |
aattacctgtaggagctgcttagcaaggtcaatagagataagtccagcactacaacccataccaccaagattataactttgaacattccctcttaactta |
34052034 |
T |
|
| Q |
130 |
taatgattcacaatcatagcagaaagagaaggtgtaggattaaacaaactacaattcacaaccaaaataccaatatccttagccttaacaccagttttct |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
34052033 |
taatgattcacaatcatagcagaaagagaaggtgtaggattaaacaaactacaattcacaaccaaaatcccaatatccttagccttaacaccagttttct |
34051934 |
T |
|
| Q |
230 |
ccaaaagctcatcaatagcaccaaacataacttcctcagcttctttccttgcttcagccatacaaggatttggtggaacactcaatatt |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34051933 |
ccaaaagctcatcaatagcaccaaacataacttcctcagcttctttccttgcttcagccatacaaggatttggtggaacactcaatatt |
34051845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 33 - 318
Target Start/End: Complemental strand, 15237301 - 15237016
Alignment:
| Q |
33 |
tacctgtaggagctgcttagcaaggtcaatagagataagtccagcactacaacccataccaccaagattataactttgaacattccctcttaacttataa |
132 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||| ||||| ||||||||| |
|
|
| T |
15237301 |
tacctgtaggagctgtttggcaaggtcaatagagataagaccagcactacaacccataccaccaagattataactcaagatatttcctctcaacttataa |
15237202 |
T |
|
| Q |
133 |
tgattcacaatcatagcagaaagagaaggtgtaggattaaacaaactacaattcacaaccaaaataccaatatccttagccttaacaccagttttctcca |
232 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| | | |
|
|
| T |
15237201 |
tgattcacaatcatggcagaaagagatggtgttggattaaacaaactacaattcacaaccaaaatcccaatatccttagccttcacaccagttttttgaa |
15237102 |
T |
|
| Q |
233 |
aaagctcatcaatagcaccaaacataacttcctcagcttctttccttgcttcagccatacaaggatttggtggaacactcaatatt |
318 |
Q |
| |
|
|| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||| ||||| || |||| |||| |
|
|
| T |
15237101 |
gaacctcatcaatagcaccaaacataacctcttcagcttctttccttgcttcagccatacatggattaggtgggaccctcattatt |
15237016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 142
Target Start/End: Complemental strand, 31197743 - 31197650
Alignment:
| Q |
49 |
ttagcaaggtcaatagagataagtccagcactacaacccataccaccaagattataactttgaacattccctcttaacttataatgattcacaa |
142 |
Q |
| |
|
|||||||| ||||| || ||||| |||||||||||||||||||| ||||||||||| |||| || || ||||| ||| ||||||||||||| |
|
|
| T |
31197743 |
ttagcaagatcaattgaaataagaccagcactacaacccatacctccaagattatagcttttaatgtttgttcttagcttgtaatgattcacaa |
31197650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 49 - 217
Target Start/End: Complemental strand, 26452896 - 26452728
Alignment:
| Q |
49 |
ttagcaaggtcaatagagataagtccagcactacaacccataccaccaagattataactttgaacattccctcttaacttataatgattcacaatcatag |
148 |
Q |
| |
|
|||||||| ||||||| |||| ||||||||||||||||||||||| | |||| ||||| || ||| || ||||| ||||| | || |||||||||| |
|
|
| T |
26452896 |
ttagcaagatcaatagctataacaccagcactacaacccataccacccaaattaaaacttctaatattaccccttaatttatatttgttaacaatcatag |
26452797 |
T |
|
| Q |
149 |
cagaaagagaaggtgtaggattaaacaaactacaattcacaaccaaaataccaatatccttagccttaa |
217 |
Q |
| |
|
| ||||| || || || |||||||||||||||||||| ||||| | ||||||||||| |||| ||||| |
|
|
| T |
26452796 |
ctgaaagtgatggcgttggattaaacaaactacaattaacaacaagtataccaatatctttaggcttaa |
26452728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 49 - 191
Target Start/End: Original strand, 49041793 - 49041935
Alignment:
| Q |
49 |
ttagcaaggtcaatagagataagtccagcactacaacccataccaccaagattataactttgaacattccctcttaacttataatgattcacaatcatag |
148 |
Q |
| |
|
|||||||| ||||| || ||||| |||||||||||||||||||| || |||||||| |||| || || ||| | ||| ||||| ||||||||||| | |
|
|
| T |
49041793 |
ttagcaagatcaattgaaataagaccagcactacaacccatacctccgagattatagcttttaatgtttgttctaagcttgtaatggttcacaatcattg |
49041892 |
T |
|
| Q |
149 |
cagaaagagaaggtgtaggattaaacaaactacaattcacaac |
191 |
Q |
| |
|
||||||| ||||| || || ||||||||||||||||| ||||| |
|
|
| T |
49041893 |
cagaaagtgaaggagttgggttaaacaaactacaatttacaac |
49041935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 284
Target Start/End: Complemental strand, 31333232 - 31333184
Alignment:
| Q |
236 |
gctcatcaatagcaccaaacataacttcctcagcttctttccttgcttc |
284 |
Q |
| |
|
||||||| |||||||||||||||||| |||| ||||||||||| ||||| |
|
|
| T |
31333232 |
gctcatcgatagcaccaaacataactgcctcggcttctttcctagcttc |
31333184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 49 - 191
Target Start/End: Complemental strand, 26464000 - 26463858
Alignment:
| Q |
49 |
ttagcaaggtcaatagagataagtccagcactacaacccataccaccaagattataactttgaacattccctcttaacttataatgattcacaatcatag |
148 |
Q |
| |
|
|||||||| ||||| || ||||| |||||||||||||||||||| ||||||||||| |||| || || ||||| ||| | ||| ||||||||||| | |
|
|
| T |
26464000 |
ttagcaagatcaattgaaataagaccagcactacaacccatacctccaagattatagcttttaatgtttgttcttagcttgtcatggttcacaatcattg |
26463901 |
T |
|
| Q |
149 |
cagaaagagaaggtgtaggattaaacaaactacaattcacaac |
191 |
Q |
| |
|
||||||| ||||| || || ||| ||||||||||||| ||||| |
|
|
| T |
26463900 |
cagaaagggaaggagttgggttatacaaactacaatttacaac |
26463858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 73 - 212
Target Start/End: Complemental strand, 10277465 - 10277326
Alignment:
| Q |
73 |
ccagcactacaacccataccaccaagattataactttgaacattccctcttaacttataatgattcacaatcatagcagaaagagaaggtgtaggattaa |
172 |
Q |
| |
|
|||||||| || |||||||||| ||||||||| | || ||| ||||| | ||||||||||| ||||| || | ||||| || ||||||||||||| |
|
|
| T |
10277465 |
ccagcactgcatcccataccactaagattatagatcaaaatatttcctctaagtttataatgattaacaatagtatctgaaagtgatggtgtaggattaa |
10277366 |
T |
|
| Q |
173 |
acaaactacaattcacaaccaaaataccaatatccttagc |
212 |
Q |
| |
|
| |||| ||||||||| || | ||| |||||||| ||||| |
|
|
| T |
10277365 |
ataaacaacaattcaccacaagaattccaatatctttagc |
10277326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 231 - 282
Target Start/End: Original strand, 27778167 - 27778218
Alignment:
| Q |
231 |
caaaagctcatcaatagcaccaaacataacttcctcagcttctttccttgct |
282 |
Q |
| |
|
|||||| ||||||||||||||||| || ||| |||||| ||||||||||||| |
|
|
| T |
27778167 |
caaaagatcatcaatagcaccaaaaatcactgcctcagtttctttccttgct |
27778218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 67 - 107
Target Start/End: Complemental strand, 48670745 - 48670705
Alignment:
| Q |
67 |
ataagtccagcactacaacccataccaccaagattataact |
107 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
48670745 |
ataattccagcactacaacccataccaccaagattataact |
48670705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 284
Target Start/End: Original strand, 23499954 - 23500003
Alignment:
| Q |
235 |
agctcatcaatagcaccaaacataacttcctcagcttctttccttgcttc |
284 |
Q |
| |
|
|||||||| ||||| |||||||||||| |||| ||||||||||| ||||| |
|
|
| T |
23499954 |
agctcatcgatagcgccaaacataactgcctccgcttctttcctagcttc |
23500003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2626 times since January 2019
Visitors: 4010