View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0625_low_2 (Length: 327)
Name: NF0625_low_2
Description: NF0625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0625_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-175; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-175
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 40188106 - 40188419
Alignment:
| Q |
1 |
tttgtttagtttaaaggaacttgctttgttccctttagatatacatatacccttatatactaactaaggcacacaaaaaccaaagagagtttatagatat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40188106 |
tttgtttagtttaaaggaacttgctttgttccctttagatatacatatacccttatatactaactaaggcacacaaaaaccaaagagagtttatagatat |
40188205 |
T |
|
| Q |
101 |
atttcattacattgttggttagatacttagatatggtatgattagtatatgattgagttgcattgcttctagacatattttccttgttattttgttatct |
200 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40188206 |
atttcattacattgtttgttagatacttagatatggtatgattagtatatgattgagttgcattgcttctagacatattttccttgttattttgttatct |
40188305 |
T |
|
| Q |
201 |
tgtgagagaaaatatgaagagaatggaaaacaatgatgatagtgttgacattaacaatgaaaataactggttaggtttttcactctctcctcaaatgaat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40188306 |
tgtgagagaaaatatgaagagaatggaaaacaatgatgatagtgttgacattaacaatgaaaataactggttaggtttttcactctctcctcaaatgaat |
40188405 |
T |
|
| Q |
301 |
aatattggtgtttc |
314 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
40188406 |
aatattggtgtttc |
40188419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2965 times since January 2019
Visitors: 4020