View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0625_low_3 (Length: 308)
Name: NF0625_low_3
Description: NF0625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0625_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 30 - 303
Target Start/End: Complemental strand, 47336504 - 47336231
Alignment:
| Q |
30 |
ctctcgaaacgcacgtttgcaacaaatccatcctcaatacaaacataggcttaaaattgcaccagaaagtagaatggctgac-gaaacgataattcaaac |
128 |
Q |
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|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
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| T |
47336504 |
ctctcgaaacgcacttttacaacaaatccatcctcaatacaaacataggcttaaaattgcaccagaaagtagaatggctgattgaaacgataatttaaac |
47336405 |
T |
|
| Q |
129 |
atactttaaactttcaccattctggagaaagagtgcacaaggagggagttctaatcagaatgctaaagtgattggccacaaaaatggatttgacactgca |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47336404 |
atactttaaactttcaccattctggagaaagagtgcacaaggagggagttctaatcagaatgctaaagtgattggccacaaaaatggatttgacactgca |
47336305 |
T |
|
| Q |
229 |
tctttnnnnnnnnntataagaaggcatttagtacatgagtatcaaatgcttatattatctcattttcttttctgt |
303 |
Q |
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| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47336304 |
t-ttttaaaaaaactataagaaggcatttagcacatgagtatcaaatgcttatattatctcattttcttttctgt |
47336231 |
T |
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