View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0626_high_1 (Length: 788)
Name: NF0626_high_1
Description: NF0626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0626_high_1 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 371 - 788
Target Start/End: Complemental strand, 2909918 - 2909498
Alignment:
| Q |
371 |
ctatattttctattaaaaaagaactcataaaagnnnnnnnn-aaccgtcggattctttggggcgtgagaata-gataatttaaggtttgaccgaa-gata |
467 |
Q |
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| T |
2909918 |
ctatattttctattaaaaaagaactcgtaaaagtttttttttaaccgtcggattctttgaggcgtgagaatatgataatttaagatttgaccgaaagata |
2909819 |
T |
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| Q |
468 |
agttaagtataatnnnnnnnntatttaacaattcgttttttgtagagctcgttaaccatttgaattaattgtttgattaattcagagaagctttgatacc |
567 |
Q |
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| T |
2909818 |
agtgaagtataataaaaaaattatttaacaatttattttttgtagagttcgttaaccatttgaattaattgtttgaataattcaaggaagctttgatacc |
2909719 |
T |
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| Q |
568 |
aaagatataagatcaaacttaaatgttatgttgagtgttggcaacgatattgtttgtgaggattaattttgtaacctaaagtggcttaccgttgcaccta |
667 |
Q |
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| T |
2909718 |
aaagatataagatcaaacttaaatgttatgttgagtgttggcaacgatattatttgtgaggattaattttgtcatctagaaaggcttaacgtcgcaacta |
2909619 |
T |
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| Q |
668 |
gttactcgtttgtttccactcatgtgtattttttgtatacgtgtgaaaaataaatatactaattgtaaattaaaaaatgatgannnnnnngatgaataaa |
767 |
Q |
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| T |
2909618 |
gttactcgtttgtttccactcatgtgtattttttgtatacgtctgaaaaataaatatattaattgtaaattaaaaaatgatgatttttttgatgaataaa |
2909519 |
T |
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| Q |
768 |
acaattcatttttataaatga |
788 |
Q |
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| T |
2909518 |
acaattcatttttataaatga |
2909498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 162; E-Value: 5e-86
Query Start/End: Original strand, 145 - 310
Target Start/End: Complemental strand, 2910113 - 2909948
Alignment:
| Q |
145 |
tccaacgttatcatgtactttgttattaacacgtgtttcaatgtttatgacgactgtggcccacatcatgcactttctttgtagctgtgtgaattgcaat |
244 |
Q |
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| T |
2910113 |
tccaacgttatcatgtactttgttattaacacgtgtttcaatgtttatgacgactgtggcccacatcatgcactttctttgtagctgtgtgaattgcaat |
2910014 |
T |
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| Q |
245 |
actaatgtcagctggatggataagaaaatttattcaagacagaaatttaaaagcttagtggtttat |
310 |
Q |
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| T |
2910013 |
actcatgtcagctggatggataagaaaatttattcaagacagaaatttaaaagcttagtggtttat |
2909948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 14 - 105
Target Start/End: Complemental strand, 2910244 - 2910153
Alignment:
| Q |
14 |
gatgaagtagagccgttgattgttccaaatatggcttttaaccgttgatttgtgggatccacttttcctgaaggttctttcttcttcgttcg |
105 |
Q |
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| T |
2910244 |
gatgaagtggagccgttgattgttccaaatatggcttttaaccgttgatttgtgggatccacttttcctgaaggttctttcttcttcgttcg |
2910153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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