View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0626_high_14 (Length: 298)
Name: NF0626_high_14
Description: NF0626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0626_high_14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 36941676 - 36941944
Alignment:
| Q |
1 |
agtccctgctaaagctgtggtttgtccaccttttgcatgatccacaaaccttgctaaaccgaaatctccaagttttgcgttaaactctgaatccaacatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
36941676 |
agtccctgctaaagctgtggtttgtccaccttttgcatgatccacaaaccttgctaaaccgaaatctccaagttttgcgttaaattctgaatccaacatg |
36941775 |
T |
|
| Q |
101 |
atgttacttgcttttatgtctctatgtacaacacattgttcccattcttcatgcaagtacaacaatgcagatgccaagcctttagctattgtatatctaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36941776 |
atgttacttgcttttatgtctctatgtacaacacattgttcccattcttcatgcaagtacaacaatgcagatgccaagcctttagctattgtatatctaa |
36941875 |
T |
|
| Q |
201 |
caccccatttcaacaaactttgtttcttgaaaagatgaatgtctaaactaccatttggcatgtactcat |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36941876 |
caccccatttcaacaaactttgtttcttgaaaagatgaatgtctaaactaccatttggcatgtactcat |
36941944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 36939442 - 36939174
Alignment:
| Q |
1 |
agtccctgctaaagctgtggtttgtccaccttttgcatgatccacaaaccttgctaaaccgaaatctccaagttttgcgttaaactctgaatccaacatg |
100 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
36939442 |
agtccctgctaaagctgtagtttgtgcaccttttgcatggtccacaaaccttgctaaaccgaaatctccaagttttgcattaaactctgaatccaacatg |
36939343 |
T |
|
| Q |
101 |
atgttacttgcttttatgtctctatgtacaacacattgttcccattcttcatgcaagtacaacaatgcagatgccaagcctttagctattgtatatctaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||| ||||||||| |||||||||||||||||| |
|
|
| T |
36939342 |
atgttacttgcttttatgtctctatgtacaacacattgttcccattcttcatgcaaatataacagtgcagaagccaagcctctagctattgtatatctaa |
36939243 |
T |
|
| Q |
201 |
caccccatttcaacaaactttgtttcttgaaaagatgaatgtctaaactaccatttggcatgtactcat |
269 |
Q |
| |
|
||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36939242 |
caccccatttcaagaaactttgatttttgaaaagatgaatgtctaaactaccatttggcatgtactcat |
36939174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 59 - 189
Target Start/End: Complemental strand, 36949613 - 36949483
Alignment:
| Q |
59 |
ccgaaatctccaagttttgcgttaaactctgaatccaacatgatgttacttgcttttatgtctctatgtacaacacattgttcccattcttcatgcaagt |
158 |
Q |
| |
|
|||||||||||||| |||| || || | ||||||||||| | || |||| ||||||||||||||||| ||||| || || || |||||||||| || |
|
|
| T |
36949613 |
ccgaaatctccaagctttgtattgaaattagaatccaacataacattgcttgattttatgtctctatgtagcacacaatgctcacactcttcatgcaggt |
36949514 |
T |
|
| Q |
159 |
acaacaatgcagatgccaagcctttagctat |
189 |
Q |
| |
|
|||| ||||| || ||||| ||| ||||||| |
|
|
| T |
36949513 |
acaataatgccgaggccaaacctctagctat |
36949483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 59 - 189
Target Start/End: Complemental strand, 36959747 - 36959617
Alignment:
| Q |
59 |
ccgaaatctccaagttttgcgttaaactctgaatccaacatgatgttacttgcttttatgtctctatgtacaacacattgttcccattcttcatgcaagt |
158 |
Q |
| |
|
|||||||||||||| |||| || || | ||||||||||| | || |||| ||||||||||||||||| ||||| || || || |||||||||| || |
|
|
| T |
36959747 |
ccgaaatctccaagctttgtattgaaattagaatccaacataacattgcttgattttatgtctctatgtagcacacaatgctcacactcttcatgcaggt |
36959648 |
T |
|
| Q |
159 |
acaacaatgcagatgccaagcctttagctat |
189 |
Q |
| |
|
|||| ||||| || ||||| ||| ||||||| |
|
|
| T |
36959647 |
acaataatgccgaggccaaacctctagctat |
36959617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 177
Target Start/End: Complemental strand, 36934535 - 36934450
Alignment:
| Q |
92 |
tccaacatgatgttacttgcttttatgtctctatgtacaacacattgttcccattcttcatgcaagtacaacaatgcagatgccaa |
177 |
Q |
| |
|
|||||||| ||||| |||| ||||||||| ||||| | ||||||| |||||||||||| ||||| || | |||||| || ||||| |
|
|
| T |
36934535 |
tccaacattatgttgcttgattttatgtccctatgaatcacacatttttcccattcttcctgcaaataaagcaatgccgaggccaa |
36934450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 168
Target Start/End: Complemental strand, 5820970 - 5820934
Alignment:
| Q |
132 |
cacattgttcccattcttcatgcaagtacaacaatgc |
168 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||| |
|
|
| T |
5820970 |
cacattgttcccattcttcatgaaggtacaacaatgc |
5820934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 92 - 177
Target Start/End: Complemental strand, 47871658 - 47871573
Alignment:
| Q |
92 |
tccaacatgatgttacttgcttttatgtctctatgtacaacacattgttcccattcttcatgcaagtacaacaatgcagatgccaa |
177 |
Q |
| |
|
|||||||| ||||| || | ||||||||||||||| | ||||||||||||||||||||||| | ||||||||||| || ||||| |
|
|
| T |
47871658 |
tccaacataatgttgctggattttatgtctctatgaatcacacattgttcccattcttcatgaagatacaacaatgccgaagccaa |
47871573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3395 times since January 2019
Visitors: 4034