View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0626_high_18 (Length: 283)

Name: NF0626_high_18
Description: NF0626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0626_high_18
NF0626_high_18
[»] chr4 (3 HSPs)
chr4 (103-270)||(7171293-7171460)
chr4 (5-231)||(7169800-7170026)
chr4 (69-172)||(8321513-8321616)
[»] chr2 (1 HSPs)
chr2 (83-253)||(19993810-19993980)
[»] scaffold0021 (1 HSPs)
scaffold0021 (61-171)||(156520-156630)
[»] chr1 (7 HSPs)
chr1 (44-234)||(17621964-17622154)
chr1 (88-253)||(25427571-25427736)
chr1 (33-172)||(11993788-11993926)
chr1 (76-200)||(26645949-26646072)
chr1 (69-114)||(35395198-35395244)
chr1 (119-168)||(26330497-26330545)
chr1 (101-145)||(15984102-15984146)
[»] chr5 (1 HSPs)
chr5 (35-234)||(33699763-33699962)
[»] chr7 (2 HSPs)
chr7 (103-201)||(15963195-15963293)
chr7 (151-217)||(11728478-11728544)
[»] chr6 (1 HSPs)
chr6 (34-214)||(23905678-23905858)
[»] chr8 (3 HSPs)
chr8 (37-200)||(260596-260759)
chr8 (37-200)||(655162-655325)
chr8 (37-200)||(840897-841060)
[»] chr3 (1 HSPs)
chr3 (37-200)||(21806638-21806803)


Alignment Details
Target: chr4 (Bit Score: 164; Significance: 1e-87; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 103 - 270
Target Start/End: Original strand, 7171293 - 7171460
Alignment:
Q  103 gtctacttgaccatataagttttgcacatcctcttcagactttaatcgaccacacaatccacctttatactcgaaaggggattactgaagctttacaaca 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  7171293 gtctacttgaccatataagttttgcacatcctcttcagactttaatcgaccacacaatccacctttatattcgaaaggggattactgaagctttacaaca 7171392  T
Q  203 aattacacaattgttattgtgattttgatctttgcaaagaattaattagatttcagagtgacctctct 270  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7171393 aattacacaattgttattgtgattttgatctttgcaaagaattaattagatttcagagtgacctctct 7171460  T

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Target: chr4; HSP #2
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 5 - 231
Target Start/End: Original strand, 7169800 - 7170026
Alignment:
Q  5 cccaattgagctagtgcaaaccccatattgactgtgatatttttcaatctgatgtttgagatagcctctcggattttgcacactttctcttctttttggt 104  Q
    ||||| |||||||||||||||||||   ||||||  |||||||||||  || ||||||||||| ||||||| |||||||| |||||||||||||||||||    
T  7169800 cccaactgagctagtgcaaaccccac--tgactg--atatttttcaacatggtgtttgagataccctctcgaattttgcaaactttctcttctttttggt 7169895  T
Q  105 ctacttgaccatata----agttttgcacatcctcttcagactttaatcgaccacacaatccacctttatactcgaaaggggattactgaagctttacaa 200  Q
    |||||||||||||||    ||| |||  ||||| |||||||||||||||||||||||||||||||||||||| | |||  ||||||| ||||||||||||    
T  7169896 ctacttgaccatatatataagtattgggcatccccttcagactttaatcgaccacacaatccacctttataccctaaataggattaccgaagctttacaa 7169995  T
Q  201 caaattacacaattgttattgtgattttgat 231  Q
    |||||||||||||||||||||||||||||||    
T  7169996 caaattacacaattgttattgtgattttgat 7170026  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 69 - 172
Target Start/End: Original strand, 8321513 - 8321616
Alignment:
Q  69 cctctcggattttgcacactttctcttc-tttttggtctacttgaccatataagttttgcacatcctcttcagactttaatcgaccacacaatccacctt 167  Q
    |||||| ||| ||||||||||||||||| ||| |||||| ||||||| || |||||||| ||| |||||| ||||||| | | | || ||||||||||||    
T  8321513 cctctcagatgttgcacactttctcttcatttctggtctccttgaccttacaagttttggacaacctctttagacttt-agctatcatacaatccacctt 8321611  T
Q  168 tatac 172  Q
    |||||    
T  8321612 tatac 8321616  T

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Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 83 - 253
Target Start/End: Original strand, 19993810 - 19993980
Alignment:
Q  83 cacactttctcttctttt-tggtctacttgaccatataagttttgcacatcctcttcagactttaatcgaccacacaatccacctttatactcgaaaggg 181  Q
    |||||||||||||||||| |||||||| | || ||| ||| |||  ||| |||||||||| ||||  | ||||||||||||||||| |||| | |||| |    
T  19993810 cacactttctcttcttttctggtctacctaacaatacaagatttagacaacctcttcagattttag-ctaccacacaatccaccttaataccctaaagag 19993908  T
Q  182 gattactgaagctttacaacaaattacacaattgttattgtgattttgatctttgcaaagaattaattagat 253  Q
    ||||| |||||||||||| |  |||| ||||||||| ||||||| |||||||||  ||||||| ||||||||    
T  19993909 gattagtgaagctttacatcttattatacaattgttcttgtgatcttgatctttaaaaagaatcaattagat 19993980  T

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Target: scaffold0021 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 61 - 171
Target Start/End: Complemental strand, 156630 - 156520
Alignment:
Q  61 tgagatagcctctcggattttgcacactttctcttctttt-tggtctacttgaccatataagttttgcacatcctcttcagactttaatcgaccacacaa 159  Q
    ||||||| |||||| || | ||||| |||||||||||||| |||||||||| ||||||||||||||| ||| ||| |||||||||||| | |||| ||||    
T  156630 tgagataccctctcagaatctgcac-ctttctcttcttttctggtctacttaaccatataagttttggacagcctattcagactttaagctaccatacaa 156532  T
Q  160 tccacctttata 171  Q
    || |||||||||    
T  156531 tcaacctttata 156520  T

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Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 44 - 234
Target Start/End: Complemental strand, 17622154 - 17621964
Alignment:
Q  44 tttttcaatctgatgtttgagatagcctctcggattttgcacactttctcttctttt-tggtctacttgaccatataagttttgcacatcctcttcagac 142  Q
    |||||||||||| ||  ||||||| |||||  |||||| ||||||||||| || ||| | |||||||| |||||| ||||||||  || ||| ||| |||    
T  17622154 tttttcaatctggtgcatgagataccctcttagattttacacactttctcgtcatttctagtctactttaccatacaagttttgagcagccttttcggac 17622055  T
Q  143 tttaatcgaccacacaatccacctttatactcgaaaggggattactgaagctttacaacaaattacacaattgttattgtgattttgatctt 234  Q
    |||| |  |||||||||||||||||||||    |||| |||||  |||||||||||||    ||||||||||||| ||||||||| ||||||    
T  17622054 tttagtt-accacacaatccacctttatagcataaagaggattggtgaagctttacaaatgcttacacaattgttcttgtgatttcgatctt 17621964  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 88 - 253
Target Start/End: Original strand, 25427571 - 25427736
Alignment:
Q  88 tttctcttctttt-tggtctacttgaccatataagttttgcacatcctcttcagactttaatcgaccacacaatccacctttatactcgaaaggggatta 186  Q
    ||||||||||||| |||||||| ||||||||  | ||||  |||  |||||| |||||||| | |||||||||||| ||||||||  | |||| ||| ||    
T  25427571 tttctcttcttttctggtctacctgaccatactatttttagacagtctcttcggactttaagctaccacacaatcctcctttataacc-aaagaggaata 25427669  T
Q  187 ctgaagctttacaacaaattacacaattgttattgtgattttgatctttgcaaagaattaattagat 253  Q
     |||||||||||||   |||||| || |||||||||||| ||||| ||| |||||||| ||||||||    
T  25427670 atgaagctttacaattgattacataaatgttattgtgatcttgatttttacaaagaatcaattagat 25427736  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 33 - 172
Target Start/End: Complemental strand, 11993926 - 11993788
Alignment:
Q  33 tgactgtgatatttttcaatctgatgtttgagatagcctctcggattttgcacactttctcttctttttggtctacttgaccatataagttttgcacatc 132  Q
    ||||||||| ||||||| || |  || |||||||| |||||| ||||  | ||||||||||||||||||||||||  ||||| || |||||||| |||      
T  11993926 tgactgtgaaatttttcgatttagtgcttgagataccctctcagattccgaacactttctcttctttttggtctatctgaccttacaagttttggacagg 11993827  T
Q  133 ctcttcagactttaatcgaccacacaatccacctttatac 172  Q
    |||||||  |||||| | ||||||||||| ||||||||||    
T  11993826 ctcttcaatctttaa-ctaccacacaatctacctttatac 11993788  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 76 - 200
Target Start/End: Complemental strand, 26646072 - 26645949
Alignment:
Q  76 gattttgcacactttctcttctttttggtctacttgaccatataagttttgcacatcctcttcagactttaatcgaccacacaatccacctttat-actc 174  Q
    |||| ||||||| || ||||| || |||| |||||| ||||| |||||||  |||| ||||||||||||||| | |||||||||||||||||||| ||||    
T  26646072 gattctgcacacattatcttcattctggtttacttggccatacaagttttagacatgctcttcagactttaa-ctaccacacaatccacctttataactc 26645974  T
Q  175 gaaaggggattactgaagctttacaa 200  Q
     ||||  ||||| |||||||||||||    
T  26645973 -aaagaagattagtgaagctttacaa 26645949  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 114
Target Start/End: Original strand, 35395198 - 35395244
Alignment:
Q  69 cctctcggattttgcacactttctcttc-tttttggtctacttgacc 114  Q
    ||||||||||  |||||||||||||||| ||||||||||||||||||    
T  35395198 cctctcggatggtgcacactttctcttcatttttggtctacttgacc 35395244  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 168
Target Start/End: Original strand, 26330497 - 26330545
Alignment:
Q  119 aagttttgcacatcctcttcagactttaatcgaccacacaatccaccttt 168  Q
    |||||||| ||| |||||||||||||||| | ||||||||||||||||||    
T  26330497 aagttttggacaacctcttcagactttaa-caaccacacaatccaccttt 26330545  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 15984102 - 15984146
Alignment:
Q  101 tggtctacttgaccatataagttttgcacatcctcttcagacttt 145  Q
    ||||||||| |||| || |||||||||||||||||| ||||||||    
T  15984102 tggtctactcgaccttacaagttttgcacatcctctccagacttt 15984146  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 35 - 234
Target Start/End: Original strand, 33699763 - 33699962
Alignment:
Q  35 actgtgatatttttcaatctgatgtttgagatagcctctcggattttgcacactttctcttctttt-tggtctacttgaccatataagttttgcacatcc 133  Q
    ||||||| ||||| |||| || ||| ||||||| |||||| |||| ||||||||||||||| |||| | |||||    ||| || || |||||  || ||    
T  33699763 actgtgagattttccaatatggtgtctgagataccctctcagattctgcacactttctcttattttctagtctaaccaaccttacaaattttgggcagcc 33699862  T
Q  134 tcttcagactttaatcgaccacacaatccacctttatactcgaaaggggattactgaagctttacaacaaattacacaattgttattgtgattttgatct 233  Q
    |||||||||||||   | | ||||||||||||||||||| | |||| |||||| |||||||||||||   || || |||||||| ||||||| |||||||    
T  33699863 tcttcagactttagctg-ctacacaatccacctttataccctaaagaggattagtgaagctttacaattgatgactcaattgttcttgtgatcttgatct 33699961  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 103 - 201
Target Start/End: Original strand, 15963195 - 15963293
Alignment:
Q  103 gtctacttgaccatataagttttgcacatcctcttcagactttaatcgaccacacaatccacctttatactcgaaaggggattactgaagctttacaac 201  Q
    |||||| ||||||||||||||||| ||| |||||||||| ||  | | ||||||||||||| |||||||| | |||  |||||| |||||| |||||||    
T  15963195 gtctacctgaccatataagttttggacagcctcttcagatttggagctaccacacaatccatctttataccctaaaaaggattagtgaagccttacaac 15963293  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 217
Target Start/End: Original strand, 11728478 - 11728544
Alignment:
Q  151 accacacaatccacctttatactcgaaaggggattactgaagctttacaacaaattacacaattgtt 217  Q
    |||||||||||||||||||||  | |||| |||||| ||||||||||||||   |||||||||||||    
T  11728478 accacacaatccacctttatatcctaaagaggattaatgaagctttacaactgtttacacaattgtt 11728544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 214
Target Start/End: Complemental strand, 23905858 - 23905678
Alignment:
Q  34 gactgtgatatttttcaatctgatgtttgagatagcctctcggattttgcacactttctctt-ctttttggtctacttgaccatataagttttgcacatc 132  Q
    |||| |||||||||||||| || ||||||||||  ||| |  |||| |||| ||||||||||  ||| |||| |||  |||| || |||||||| |||      
T  23905858 gactatgatatttttcaatatggtgtttgagatgcccttttagattctgcaaactttctcttaatttctggtttacccgaccgtaaaagttttggacaat 23905759  T
Q  133 ctcttcagactttaatcgaccacacaatccacctttatactcgaaaggggattactgaagctttacaacaaattacacaatt 214  Q
    ||||||||||||||| | ||||||||||||  ||||||||   |||| |||||| |||||||||| |||  |||||| ||||    
T  23905758 ctcttcagactttaa-ctaccacacaatccgtctttataccttaaagaggattagtgaagctttagaactgattacataatt 23905678  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 200
Target Start/End: Complemental strand, 260759 - 260596
Alignment:
Q  37 tgtgatatttttcaatctgatgtttgagatagcctctcggattttgcacactttctcttctttt-tggtctacttgaccatataagttttgcacatcctc 135  Q
    ||||| ||||| |||| || ||| ||||||| |||||| |||| | |||| ||||||||||||| |||||||| | ||| || ||||||  |||  | ||    
T  260759 tgtgagattttccaatatggtgtatgagataccctctcagattcttcacattttctcttcttttatggtctacctaaccttacaagtttaacactacatc 260660  T
Q  136 ttcagactttaatcgaccacacaatccacctttatactcgaaaggggattactgaagctttacaa 200  Q
    |||| ||||| | | |||||| |||||||||||||||   |||| | |||| |||||||||||||    
T  260659 ttcatacttt-agctaccacataatccacctttataccataaagagaattagtgaagctttacaa 260596  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 200
Target Start/End: Original strand, 655162 - 655325
Alignment:
Q  37 tgtgatatttttcaatctgatgtttgagatagcctctcggattttgcacactttctcttctttt-tggtctacttgaccatataagttttgcacatcctc 135  Q
    ||||| ||||| |||| || ||| ||||||| |||||| |||| | |||| ||||||||||||| |||||||| | ||| || ||||||  |||  | ||    
T  655162 tgtgagattttccaatatggtgtatgagataccctctcagattcttcacattttctcttcttttatggtctacctaaccttacaagtttaacactacatc 655261  T
Q  136 ttcagactttaatcgaccacacaatccacctttatactcgaaaggggattactgaagctttacaa 200  Q
    |||| ||||| | | |||||| |||||||||||||||   |||| | |||| |||||||||||||    
T  655262 ttcatacttt-agctaccacataatccacctttataccataaagagaattagtgaagctttacaa 655325  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 200
Target Start/End: Original strand, 840897 - 841060
Alignment:
Q  37 tgtgatatttttcaatctgatgtttgagatagcctctcggattttgcacactttctcttctttt-tggtctacttgaccatataagttttgcacatcctc 135  Q
    ||||| ||||| |||| || ||| ||||||| |||||| |||| | |||| ||||||||||||| |||||||| | ||| || ||||||  |||  | ||    
T  840897 tgtgagattttccaatatggtgtatgagataccctctcagattcttcacattttctcttcttttatggtctacctaaccttacaagtttaacactacatc 840996  T
Q  136 ttcagactttaatcgaccacacaatccacctttatactcgaaaggggattactgaagctttacaa 200  Q
    |||| ||||| | | |||||| |||||||||||||||   |||| | |||| |||||||||||||    
T  840997 ttcatacttt-agctaccacataatccacctttataccataaagagaattagtgaagctttacaa 841060  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 200
Target Start/End: Complemental strand, 21806803 - 21806638
Alignment:
Q  37 tgtgatatttttcaatctgatgtttgagatagcctctcggattttgcac-actttctcttcttttt--ggtctacttgaccatataagttttgcacatcc 133  Q
    |||||||||||| ||| || ||| ||||||| |||||  |||| | ||| | ||||||||||||||  |||| ||||  ||| | |||||||| |||  |    
T  21806803 tgtgatattttttaatatggtgtctgagatatcctcttagattcttcactattttctcttctttttatggtccactttgccacacaagttttggacagtc 21806704  T
Q  134 tcttcagactttaatcgaccacacaatccacctttatactcgaaaggggattactgaagctttacaa 200  Q
    |||||| ||||||  | ||||||| |||||||||||||| | ||||  ||||||| |||||||||||    
T  21806703 tcttcaaactttag-ctaccacacgatccacctttataccctaaagaagattactaaagctttacaa 21806638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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